Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50930 436 / 4e-150 BCS1 cytochrome BC1 synthesis (.1) AT3G50940 399 / 3e-137 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17760 348 / 1e-116 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G18193 346 / 8e-116 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17740 346 / 3e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17730 334 / 1e-111 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18190 330 / 8e-110 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 330 / 8e-110 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 323 / 4e-107 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17750 309 / 9e-103 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014284 [exp] 725 / 0 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10037004 [exp] 365 / 1e-123 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10015802 [exp] 362 / 3e-122 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003213 [exp] 344 / 2e-114 AT5G17740 430 / 7e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024275 [exp] 338 / 9e-113 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015354 [exp] 325 / 1e-107 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10007391 [exp] 321 / 7e-106 AT3G50940 424 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014496 [exp] 316 / 6e-104 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10041918 [exp] 318 / 9e-104 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G020900 [exp] 479 / 6e-168 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.009G119066 [exp] 409 / 9e-140 AT3G50930 471 / 4e-161 cytochrome BC1 synthesis (.1) Potri.009G119132 [exp] 407 / 4e-139 AT3G50930 484 / 3e-166 cytochrome BC1 synthesis (.1) Potri.005G119900 [exp] 381 / 1e-129 AT5G17760 512 / 3e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020600 [exp] 378 / 4e-128 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020800 [exp] 374 / 2e-126 AT5G17760 506 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G177200 [exp] 369 / 1e-124 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020500 [exp] 367 / 1e-124 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G057900 [exp] 340 / 4e-114 AT3G50930 396 / 1e-133 cytochrome BC1 synthesis (.1) Potri.005G119200 [exp] 340 / 1e-113 AT1G43910 530 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10025989 pacid=23173137 polypeptide=Lus10025989 locus=Lus10025989.g ID=Lus10025989.BGIv1.0 annot-version=v1.0 ATGGAGAGCCAGGAAGAGGTAACGGACGTTTTTCACGGCGTTAAATTCAAGTGGGTTTTGGTCTCTAGACAGACGGAATCCTCCTCCTCGTCAGGTTATA GCCGGCGGCGGCACAACCACCACCAAATGTTCTTATCCAAGGAGCGGTCGTTCGAGGTCACTTTCCCCAAACAGCACAAATCAATGGCTCTCAAATCGTA CTTCCCGCACATCGTTAGGGAAGCGAAATCGATGAATCAAGAGAATAAGACCCTCAAGCTTTCGACGGTCCATCCTGAAAATCTGTACGGAAACATGTCC GAAGCGTGGAGCGGAATTAATCTAGACCATCCTGCCACATTAGACACGCTGGCTATGGATACAGAGGTGAAGGACATGGTTCTAAAAGATCTGGACAGGT TTCTGAAAAGAAAGGACTATTATAGGAAAGTTGGGAAAGCGTGGAAAAGAGGGTATTTACTGTACGGTCCTCCCGGAACAGGGAAATCCAGCTTGATCGC TGCGATGGCTAACTATCTGCATTTCGACATCTACGACCTGGAGCTGACTCAGCTGAGCCGAGACTCCGAGCTGAGGAGGTTGCTCATCGCAACCCCGAAC CGGTCAATTTTGGTAGTCGAGGACATAGATTGTACAATCGATTTAAAAGATCGATCGGGTCGTGATAATGCATCATCGACTCCTCCTGATCAAAACTCGT ACAATAACGGAGAGCAAAATCAGGAGAGAGTGAGTCTGTCAGGACTGCTGAATTTTATCGATGGGTTGTGGTCGAGTTGTGGGGACGAGAGGATTATAGT GTTCACTACGAACCATAAGGAGAAGCTAGACCCGGCGTTGCTAAGGCCCGGGAGGATGGATGTGCATATAAACCTGTCCTACTGTACTCCTTGCGGGTTC AGGATTCTGGCCTCGAATTACCTTGGCATTAAGGAGCACGAATTGTTTCCTGAGATTGAGGAGCTGATCTCGGGGTCGAAAGTGAGTCCTGCTGAAGTTG CGGAGCAGCTCATGAGGTATGATGAATCTGAGCATGAGCATGTGCTTACCATGCTCATTGAGTTTCTGAAGCTGAAGCAGAGCGAGGATGCAACAAATGC AAGTGTGGATTCAGGAGAGGATCAAAAGAGGATTGTGGAAGAGATTAGCTTGTAG
AA sequence Show only first row Show all	>Lus10025989 pacid=23173137 polypeptide=Lus10025989 locus=Lus10025989.g ID=Lus10025989.BGIv1.0 annot-version=v1.0 MESQEEVTDVFHGVKFKWVLVSRQTESSSSSGYSRRRHNHHQMFLSKERSFEVTFPKQHKSMALKSYFPHIVREAKSMNQENKTLKLSTVHPENLYGNMS EAWSGINLDHPATLDTLAMDTEVKDMVLKDLDRFLKRKDYYRKVGKAWKRGYLLYGPPGTGKSSLIAAMANYLHFDIYDLELTQLSRDSELRRLLIATPN RSILVVEDIDCTIDLKDRSGRDNASSTPPDQNSYNNGEQNQERVSLSGLLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHINLSYCTPCGF RILASNYLGIKEHELFPEIEELISGSKVSPAEVAEQLMRYDESEHEHVLTMLIEFLKLKQSEDATNASVDSGEDQKRIVEEISL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10025989 [exp]	0	1
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10015209 [exp]	1.0	0.9740
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Lus10015221 [exp]	4.2	0.9679
AT5G13190		AtGILP	GSH-induced LITAF domain prote...		Lus10001805 [exp]	5.1	0.9592
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034385 [exp]	6.9	0.9637
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Lus10039911 [exp]	8.7	0.9477
					Lus10009731 [exp]	11.4	0.9610
					Lus10020455 [exp]	11.5	0.9640
AT5G25930			Protein kinase family protein ...		Lus10034978 [exp]	11.5	0.9452
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10027586 [exp]	12.0	0.9660
AT3G61510		AT-ACS1, ACS1	ARABIDOPSIS THALIANA 1-AMINOCY...		Lus10007910 [exp]	14.0	0.9589

Compare expression of checked genes

Lus10025989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.