Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 367 / 3e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 365 / 4e-106 transmembrane receptors;ATP binding (.1.2) AT1G27180 344 / 3e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 327 / 2e-93 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41750 295 / 1e-83 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G69550 293 / 9e-82 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G51630 286 / 1e-79 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G41550 280 / 3e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16860 279 / 1e-77 RPP5, RPP4 recognition of peronospora parasitica 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 279 / 2e-77 TAO1 target of AVRB operation1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023272 [exp] 938 / 0 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 917 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10037406 [exp] 902 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001375 [exp] 897 / 0 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020238 [exp] 868 / 0 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10010574 [exp] 868 / 0 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10017143 [exp] 862 / 0 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10014207 [exp] 852 / 0 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020524 [exp] 851 / 0 AT1G27170 395 / 9e-119 transmembrane receptors;ATP binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002200 [exp] 433 / 3e-134 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 433 / 2e-132 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 430 / 2e-131 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002300 [exp] 424 / 4e-129 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 423 / 4e-129 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 424 / 7e-129 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 423 / 1e-128 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 422 / 4e-128 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 420 / 9e-128 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 415 / 1e-127 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10026011 pacid=23173179 polypeptide=Lus10026011 locus=Lus10026011.g ID=Lus10026011.BGIv1.0 annot-version=v1.0 ATGGATTCTCTTTCTCCCAAGTTGACTAGTTCAACTAATAAGTCTGGAACTTCCTCCCCTGCTCAGCAACCTCTTCCAACGGGAGAATACGAAGTTTTCC TGAGCTTCAGAGGCCCTGACGTGCGCACACAGTTTGCGGATTATCTCTATACCCGCCTCATCGCATCCAAGATTCGAACATTTAGAGACGAGGAAGGGCT TTCCAAAGGGGGTGTGATTGCCGCTTACCTTATGGACGCCATCACTGAATCAAAGATTTACATCCCGGTATTTTCTGCAAAATATGCTGATAGTAAATGG TGCCTAATGGAGCTTGCTAAGATGGTTGAGTGCTGTAAGCTAGGGAAAGGACACATCATACTCCCCATTTTCTATTTTGTAACTCCGAGTGATGTGAGGC ATCAAACGGGTCCTTACAAGGAAGCATTTGAACTGCACGGTGAGAAACATGATGCAGATACGGTTGGGGAATGGAGGGAAGCTCTCAAGCAAGTTGGAAG AATGAAGGGGTGGACTGTCAATGCATCTGATGGTCAGGGTGCTATAATAGACAAGGTTTTCTCGCTAGTTGACGAGCGTCTTATGATGACTTACAAGTCA GTTAGTGATCAAGACTTCGTTGGAATTGATTTTCACGTTGAGGAAGTGGTGAAGTTGCTGGACTTCGACTCCCTAAGCGTGGATCTGCTTAGCATTCATG GTATAGGAGGTATTGGTAAAACCACTTTAGCAAAGGCTGTGTACGATAGAGTTTATACTAACTTCGATGGGTGTTGCTTTCTCGAAGACGTAGGGGATAT GTTAACAAAGGTTGAGGGTGCTTTATCATTGCAGACTAAGGTCATCTCTACTATTTTAAGACGTGATGTCCAAATCCGAGACACTTGTATAGCACTTCAT GAGATAAAAGATAGAATCTGCAAACACAAAGTGCTTATCGTTCTTGATAATGTAGGCGAGGCATTTGAGTTCGACAAAATCTTGGGGAAGATAGGTAACT TTTCATCGGGAAGTAGATTTATAATCACAACAAGAGACAGTGTCTTGAATTTTTGTACAGAATACAAGTCATACGAGCTTAGAGAGATGAATCATGAGTA TTCACTTCAACTTTTTAGTAGACATGCTTTTAAGATGGATTCTCCTCCAAAAGATTATGAAACTCTATCTCACAAATTTGTGGAAGCTGCAGCTGGCCTG CCTTTGGCTCTGAAGGTTATAGGGTCACTTTTGTTTCGTAAAGATCAGACTGTTTGGGAAGAGAAGTTGATGCAATTGAAAGATGTGCCTCCTACTGATG TCCAAAGGAGGCTAAAGATAAGCTACGATTCATTGACGTACGAGCAACGGCAAATCTTTCTCGATATTGCATGTTTCTTTATTGGAGAGAACAAAAGGTT GCCGGTTTATATGTGGAGTGATTGTAAATTTTATCCCGAAGATGGTATCACCACTCTTATTCTCAGATCCTTGATAAAAGTTGATCAGAATGATCGGTTT TGGATGCATAATCATATTAGAGACCTTGGAAGAGCAATTGTTCGTGATGAAAATGTTGAAGACCCAGGTCAACGAAGCAGAATCTGGTTAGCTGGTGATG CTTTGGAGATGTTGAAGAGTAAACAGGGGACTGTGAAAGTTAGAGCTCTTAGTGTTCATCTAGACTGTGAGCTGACAGAAAAAGAATTTAAGAACTTGAC AAAGTTGAGATACCTTCAAGTAAAAGGTGCAATATTGACAGGAGTCTTCACGGAGATTCTTCAAGACTTACGTTGGCTTCGGCTGCATCCCTGCACTTCA ATCCCAACTCGTTTCCAGATGAACAAATTGGCAACACTCGAACTGGAGAATGTTGGGGTGACAGATGACTGGGAAGGCTGGAAAGAAATCAAGATCGCGG ACAGGCTGAAAGTGATAACTCTACTCGATTGCAGTGAAGTGAAAAGAGCTCCAGACTTGTCAGGATGCGGCGCTTTAGAGTTGATACACTTTGAATTATG TCTAAATATGGGAGGCTCACTGCACATTGGCAACTTGAAGCGTCTCAGGGAGCTTCGTGTCGTGGAATGTCAAATAACCAAGCTTAGAGGCAATGTTGCT GCGCTAACAAATCTCGAAGCTATCGACTTCTGCGCATTTGGTGGAGAGACTCGGCCCCTCCCAAAGCTTCCCAGAAGCTTAAAGAAGATTGCCATTGCCG CTGCAGTTCCTAATCTTTCGGAGCTGAAGGACTTGCAGGAATTGCACTTTAAAAGTTGTTGCGACGGGCTCGGAATTGCAGGACATGTACATAAATTGTC CAAGTTGAAAATTTTGAAAATCGACCTAGCCCTCCATGACAGTCTGGTTGTGGAAGATGATTCCGGGAATGCAGTGGCGCCTCCTCTCCTCCCATCGTCG CTCGTTTGCCTTCGCATTCAAGGCGATGAACTGCTTCAGATCCTGCCCAGTCTTGCAAATTTGAATAATTTGACAGAATTATCTCTGAGATGTATAGGGG TGCAAGAAGTTCATGGTCTGGGGGCGTTGACATCGTTGAAAATTTTGGAAATAAACGATGCACCAGACCTCGACAATCTCGATGGCCTTGAAAATCTGGC GCTTCTGACAGAATTGACAGTCTTTGACTGTCCAGAACTCGAAAGGTTGCCGAATTTGGCGACTCTTGGCATGCTATGCTGCCTGGTGATCAGTGGTTGT CCCCGAATAGCACATTTTGATGGCCTCGGTTCTCTGGTGGGACTAGAAAGGTTGGAAGTGGTGGACTGTGATTCAGCAGAAAGGTTGCGTCCTTCTCTGT GGAAGTTGGCAAAAATGAAGACCTTACTTCTTAAGGGAAACCAGCGGTTCTGGGACACTCGCAGCATTTCGCACTTGAGCTCATTGTTGAATCTAGAGAT TTCAGGATGCGACTCAGTGAAACAATTGCTGAATCTTTCTCGCCTCAAGAATCTGAAGAGCTTGTGTGTTCAAGGTTGCAAAAATTTGAGAGAGCTTACA GGACTGGAGGGAATGGAATTGCTAGAGGTGCTGGAAGTAGAATCGTGCGACTCGCTGACCGAGTTGTCCAATCTGTCGACCCTGAAGAAACTGAAGCAAC TAAGGATTGAATATTGCGGGGAGGTGAGGGAGGTTACAGGGTTTGAGGGGTTGGAGTCGTTAGAAGAGCTAGAGTTGACGAATTTGTCGTTGGTGAGTAA GTTAAGAGGTCTGTATGGTCTTAAGAATTTGAAGAGTTTCTTGATTCATGGATTAACAACGCTGAGTGAGGTTCGGGGGCTTGGGAGATTGGAGTCATTG GAGGAGATAAACATATCTAACTGCATGTCATTGAAGAGGCTGTCGGATTTATGTAATCTTACGAGATTGAAGAAACTGGATATATCAAGGAACAAATTGA GGGAAGTTACAGGGGTGGAGGGATTGGAGTCGCTGGAGACATTTATCATGGTGGATTGCAGGTCAATTAAGAAGTTTCCTGATTTGAGTAATCTCAAGAA TCTCCGGCTTGTCAATGTTCCGGGATCTTACGTTAATTTAATGAATTGA
AA sequence Show only first row Show all	>Lus10026011 pacid=23173179 polypeptide=Lus10026011 locus=Lus10026011.g ID=Lus10026011.BGIv1.0 annot-version=v1.0 MDSLSPKLTSSTNKSGTSSPAQQPLPTGEYEVFLSFRGPDVRTQFADYLYTRLIASKIRTFRDEEGLSKGGVIAAYLMDAITESKIYIPVFSAKYADSKW CLMELAKMVECCKLGKGHIILPIFYFVTPSDVRHQTGPYKEAFELHGEKHDADTVGEWREALKQVGRMKGWTVNASDGQGAIIDKVFSLVDERLMMTYKS VSDQDFVGIDFHVEEVVKLLDFDSLSVDLLSIHGIGGIGKTTLAKAVYDRVYTNFDGCCFLEDVGDMLTKVEGALSLQTKVISTILRRDVQIRDTCIALH EIKDRICKHKVLIVLDNVGEAFEFDKILGKIGNFSSGSRFIITTRDSVLNFCTEYKSYELREMNHEYSLQLFSRHAFKMDSPPKDYETLSHKFVEAAAGL PLALKVIGSLLFRKDQTVWEEKLMQLKDVPPTDVQRRLKISYDSLTYEQRQIFLDIACFFIGENKRLPVYMWSDCKFYPEDGITTLILRSLIKVDQNDRF WMHNHIRDLGRAIVRDENVEDPGQRSRIWLAGDALEMLKSKQGTVKVRALSVHLDCELTEKEFKNLTKLRYLQVKGAILTGVFTEILQDLRWLRLHPCTS IPTRFQMNKLATLELENVGVTDDWEGWKEIKIADRLKVITLLDCSEVKRAPDLSGCGALELIHFELCLNMGGSLHIGNLKRLRELRVVECQITKLRGNVA ALTNLEAIDFCAFGGETRPLPKLPRSLKKIAIAAAVPNLSELKDLQELHFKSCCDGLGIAGHVHKLSKLKILKIDLALHDSLVVEDDSGNAVAPPLLPSS LVCLRIQGDELLQILPSLANLNNLTELSLRCIGVQEVHGLGALTSLKILEINDAPDLDNLDGLENLALLTELTVFDCPELERLPNLATLGMLCCLVISGC PRIAHFDGLGSLVGLERLEVVDCDSAERLRPSLWKLAKMKTLLLKGNQRFWDTRSISHLSSLLNLEISGCDSVKQLLNLSRLKNLKSLCVQGCKNLRELT GLEGMELLEVLEVESCDSLTELSNLSTLKKLKQLRIEYCGEVREVTGFEGLESLEELELTNLSLVSKLRGLYGLKNLKSFLIHGLTTLSEVRGLGRLESL EEINISNCMSLKRLSDLCNLTRLKKLDISRNKLREVTGVEGLESLETFIMVDCRSIKKFPDLSNLKNLRLVNVPGSYVNLMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27170			transmembrane receptors;ATP bi...		Lus10026011 [exp]	0	1
AT4G08480		MEKK2, MAPKKK9	MAPK/ERK KINASE KINASE 2, mito...		Lus10029657 [exp]	6.5	0.9205
					Lus10008301 [exp]	7.5	0.9295
AT3G46540			ENTH/VHS family protein (.1)		Lus10040824 [exp]	8.1	0.9162
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	9.9	0.9249
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10031382 [exp]	15.0	0.9011
AT3G21540			transducin family protein / WD...		Lus10022194 [exp]	15.4	0.9194
AT2G44140			Peptidase family C54 protein (...		Lus10025609 [exp]	15.7	0.9147
AT5G48630			Cyclin family protein (.1.2)		Lus10003151 [exp]	17.3	0.9164
AT3G46540			ENTH/VHS family protein (.1)		Lus10016556 [exp]	18.0	0.9023
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10008658 [exp]	23.0	0.8947

Compare expression of checked genes

Lus10026011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.