Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15350 97 / 8e-26 AtENODL17 early nodulin-like protein 17 (.1) AT4G12880 92 / 6e-24 AtENODL19 early nodulin-like protein 19 (.1.2) AT3G01070 89 / 1e-22 AtENODL16 early nodulin-like protein 16 (.1) AT2G27035 89 / 1e-22 AtENODL20 early nodulin-like protein 20 (.1) AT3G17675 78 / 4e-19 Cupredoxin superfamily protein (.1) AT2G32300 75 / 2e-16 UCC1 uclacyanin 1 (.1) AT2G25060 74 / 2e-16 AtENODL14 early nodulin-like protein 14 (.1) AT2G31050 74 / 2e-16 Cupredoxin superfamily protein (.1) AT3G27200 72 / 3e-16 Cupredoxin superfamily protein (.1) AT1G17800 71 / 5e-16 AtENODL22 early nodulin-like protein 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014356 [exp] 309 / 2e-109 AT5G15350 108 / 2e-30 early nodulin-like protein 17 (.1) Lus10005229 [exp] 86 / 2e-21 AT2G27035 124 / 7e-37 early nodulin-like protein 20 (.1) Lus10005231 [exp] 86 / 3e-21 AT5G15350 192 / 8e-63 early nodulin-like protein 17 (.1) Lus10030690 [exp] 86 / 3e-21 AT5G15350 190 / 4e-62 early nodulin-like protein 17 (.1) Lus10012165 [exp] 80 / 5e-19 AT5G07475 89 / 1e-22 Cupredoxin superfamily protein (.1) Lus10026749 [exp] 77 / 9e-18 AT2G27035 135 / 7e-41 early nodulin-like protein 20 (.1) Lus10002618 [exp] 74 / 3e-17 AT3G27200 89 / 2e-23 Cupredoxin superfamily protein (.1) Lus10007026 [exp] 74 / 8e-17 AT2G32300 96 / 4e-25 uclacyanin 1 (.1) Lus10025536 [exp] 74 / 1e-16 AT2G27035 148 / 5e-46 early nodulin-like protein 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G043600 [exp] 209 / 7e-70 AT5G15350 121 / 2e-35 early nodulin-like protein 17 (.1) Potri.003G183300 [exp] 205 / 9e-68 AT5G15350 123 / 1e-35 early nodulin-like protein 17 (.1) Potri.017G088600 [exp] 97 / 8e-26 AT5G15350 194 / 5e-64 early nodulin-like protein 17 (.1) Potri.017G088500 [exp] 86 / 2e-21 AT2G27035 122 / 7e-36 early nodulin-like protein 20 (.1) Potri.001G219800 [exp] 85 / 1e-20 AT2G27035 130 / 1e-38 early nodulin-like protein 20 (.1) Potri.003G117900 [exp] 83 / 3e-20 AT3G17675 108 / 6e-31 Cupredoxin superfamily protein (.1) Potri.003G047300 [exp] 82 / 1e-19 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1) Potri.004G121100 [exp] 81 / 2e-19 AT5G15350 149 / 4e-46 early nodulin-like protein 17 (.1) Potri.013G030000 [exp] 78 / 2e-18 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.001G219900 [exp] 77 / 3e-18 AT2G27035 136 / 2e-41 early nodulin-like protein 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10026064 pacid=23173266 polypeptide=Lus10026064 locus=Lus10026064.g ID=Lus10026064.BGIv1.0 annot-version=v1.0 ATGTCCACCAGCTCAACTAATTCAGCAGCTTATCCAATCTCGTTGGTGCTTTTTTGCATCCTCATCTCCTCAATCGCCGTCAACGGCACCGACCACATCG TCGGAGCCAACAAGGGTTGGAATCCAGGCATCAACTACACTCTCTGGGCCAACAACCAAACCTTCTATGTCGGCGATTTCATCTCATTTAGGTACCAGAA GACACAGTACAACGTTTTCAGAGTGAACGAGACTGGGTACGACAACTGTACGACGGAAGGAGCGATGGGGAACTGGAGCAGTGGGAAAGATTTCATTCTT CTTGATATGGCTAAAAGATACTACTTTATTTGTGGGAATGGCCAGTGCTTTAACGGGATGAAGGTTTCTGTTGTTGTACACCCTCTGTCGCCGCCGCCGG GGGCTCCCGGCATGAATAGTACACATTCTGCTGCTCCTCCTCCGATGGCTGTGGGGTTGGTTGGCTTCGGTTTGAGACAGGCCTTGGTTTTGGGGTTGGG TTGTATCTGGTTTGGATTTAGCTGGTTGTGA
AA sequence Show only first row Show all	>Lus10026064 pacid=23173266 polypeptide=Lus10026064 locus=Lus10026064.g ID=Lus10026064.BGIv1.0 annot-version=v1.0 MSTSSTNSAAYPISLVLFCILISSIAVNGTDHIVGANKGWNPGINYTLWANNQTFYVGDFISFRYQKTQYNVFRVNETGYDNCTTEGAMGNWSSGKDFIL LDMAKRYYFICGNGQCFNGMKVSVVVHPLSPPPGAPGMNSTHSAAPPPMAVGLVGFGLRQALVLGLGCIWFGFSWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10026064 [exp]	0	1
AT2G20760			Clathrin light chain protein (...		Lus10018582 [exp]	4.2	0.9738
AT4G16515		RGF6	root meristem growth factor 6,...		Lus10008506 [exp]	11.3	0.9781
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10014356 [exp]	12.7	0.9515
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012185 [exp]	17.6	0.9760
					Lus10031379 [exp]	22.4	0.9492
					Lus10019223 [exp]	24.1	0.9736
AT1G26945	bHLH	KDR, PRE6	KIDARI, basic helix-loop-helix...		Lus10036732 [exp]	26.5	0.9726
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10010841 [exp]	26.6	0.9581
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10032355 [exp]	28.2	0.9731
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008991 [exp]	29.7	0.9611

Compare expression of checked genes

Lus10026064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.