Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11440 354 / 2e-109 MYB AtMYB65 myb domain protein 65 (.1) AT5G06100 348 / 1e-107 MYB ATMYB33 myb domain protein 33 (.1.2.3) AT2G32460 226 / 6e-64 MYB ATMYB101, AtM1 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) AT5G55020 219 / 2e-61 MYB ATMYB120 myb domain protein 120 (.1) AT4G26930 207 / 2e-58 MYB ATMYB97 myb domain protein 97 (.1) AT2G26960 206 / 7e-58 MYB ATMYB81 myb domain protein 81 (.1) AT3G02940 164 / 2e-44 MYB ATMYB107 myb domain protein 107 (.1) AT4G28110 160 / 9e-44 MYB ATMYB41 myb domain protein 41 (.1) AT3G61250 160 / 1e-43 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT5G16770 161 / 3e-43 MYB ATMYB9 myb domain protein 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008685 [exp] 1192 / 0 AT3G11440 357 / 3e-115 myb domain protein 65 (.1) Lus10008686 [exp] 656 / 0 AT4G12610 313 / 3e-102 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (.1.2) Lus10017289 [exp] 564 / 0 AT4G12610 270 / 1e-85 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (.1.2) Lus10036103 [exp] 311 / 2e-94 AT3G11440 307 / 1e-98 myb domain protein 65 (.1) Lus10026787 [exp] 308 / 3e-93 AT3G11440 301 / 4e-96 myb domain protein 65 (.1) Lus10040063 [exp] 219 / 8e-62 AT2G32460 229 / 1e-69 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10027189 [exp] 218 / 2e-60 AT2G32460 243 / 1e-73 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10035275 [exp] 218 / 2e-60 AT2G32460 233 / 5e-70 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10021539 [exp] 217 / 1e-59 AT2G32460 226 / 5e-67 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G189700 [exp] 608 / 0 AT5G06100 410 / 8e-138 myb domain protein 33 (.1.2.3) Potri.001G036000 [exp] 589 / 0 AT5G06100 402 / 1e-134 myb domain protein 33 (.1.2.3) Potri.006G009100 [exp] 387 / 1e-121 AT4G12610 289 / 8e-93 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (.1.2) Potri.016G015100 [exp] 377 / 7e-118 AT4G12610 202 / 1e-59 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (.1.2) Potri.001G224500 [exp] 369 / 6e-115 AT3G11440 298 / 1e-94 myb domain protein 65 (.1) Potri.009G018700 [exp] 368 / 7e-115 AT5G06100 286 / 1e-90 myb domain protein 33 (.1.2.3) Potri.002G228700 [exp] 213 / 2e-59 AT2G32460 234 / 6e-71 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Potri.013G130900 [exp] 204 / 5e-55 AT5G06100 177 / 1e-48 myb domain protein 33 (.1.2.3) Potri.007G093900 [exp] 166 / 5e-45 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G074500 [exp] 163 / 6e-44 AT1G34670 290 / 1e-96 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [flax] [poplar] HTH PF05793 [flax] [poplar] TFIIF_alpha Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
Representative CDS sequence Show only first row Show all	>Lus10026142 pacid=23173298 polypeptide=Lus10026142 locus=Lus10026142.g ID=Lus10026142.BGIv1.0 annot-version=v1.0 ATGACGATCGATCTTGTTCTGAAGCCGTCTTGTAGGTGCGGATCCACCTCGAATTTGTATGGAAGCAATTGCAAGCACATGACTTTGTGCTTGGACTGCG GCAAAAAGATGGCGGAAACAGGCGCCAAATGCTACGACTGTGGCGCCCCTGTCACTCGATTGATTCGAGAATATAACGTTCGGGCTACTCCTAGCAGTGA CAAGAACTATTTCATTGGTAGGTTCATGGGTGGTCTGCCAAGTTTTTCGAAGAAGAAAAGTGCTGAGAATAAATGGTCTATTCATAAAGAAGGGCTGCAA GGGCGCATGCTGTCTGAAAATTTGAGGGAAAGGTACAAGAATAAACCCTGGCTGTTGGAGGATGAAACTGGCCAGCATCGGTTTCATGGCCAAATGGAAG GCTCACAGTCTGTAACCTATTATCTATTAATGGTACAAGGAAAAGAGTTTGCTGCTATTCCTGCTGGTTCCTGGTACAACTTCAACAAGGTTGCACAATA TAAGCAACTGACGCTGGAGGAAGCGGAAGAGAAGATGAAGAACAGGAGAAAGACGGCAGAGGGATATGAAAGATGGATGATGAAAGCAGCAGCTGATGGA CCTGCTGCATTTGGTGTTAAGGATAGTCTTGATGACGCAGATGCTGGTACAGGTGGTACCAGGGGACGTAAAAAAGCATCGGGTGACAATGACGAAGGCA ATGTATCTGACAAGGGAGAGGAAGATGAGGATGATGAAGCTTCTCGGAAGAGCAGACTTGGACTAGCCAAAAGAGGTGGAGATGATGATGAAGAAGGAAA GAGAGGAGGTGACCATGATGATGATGATGATATTGAGAAGGGTGATGATTGGGAGCATGAAGAAATATTTACTGATGATGACGAAGCAGTTGGAAGTGAT CATGAGTTACCGGAAGAGTTGGCTCCTGCTCCTCCAGAAATAAAGCAGGATGATGAAGACGAGGATGAAGAGAATGAGGAAGGAAAGTTGAGTTCGTCTG GGAAAGAGTTGAAGAAGTTACTCGGGAAAGCTGCTGGGCTTAGTGATTCTGATGGTGAAGATGACGACGACGATGATGCGGAGGATGAGATTTCTCCTGT ACTAACTCCCAAGAAAAAAGAGGCTGTTAAGGAGGAACCAAGTGACAATAATACTCCATCAAAAACAACAGCTGCTGGTTCGACAAAGGGAAATGCAACA ACTTCAAAGTCAGGAAAGGAAAAGAGAAAAGCCGATGATTTCAAAGCCTCTAATTCTGCAACTCCCAAGAAGGCTAAGGCAGAAGAATCAAATTTAAAGA AGGTGAAGACGGAAGTTGAATCGAAACCTAGTGTAAAAGAAGAAGTCACACCTAATAGTAAGGGTAATTCGTCCAGCAAAGTAGCACCTCCACCAGCAAA AGCTAGTTCAGCGCCAGCTTCTGGCCCTGTCACTGAAGAGGAGATAAAGGCTGTTCTATTGGAGGGTGGGCCTATCACTACACAGGAACTTGTTGGCAGG TTTAAGTCACGTCTAAAATGCTCTGAGAAGAAGATGAGCCACATGACAAATGAAAGCAAAGACTGTTTCCTTCCCAATGAACAAATTGAATCTCCGTTGG CCGATGAAGGAAATTCCAGTAGGAAGGGAAATGGCGAAACGAATCTCAAGAAAGGCCCATGGACAGCTGCTGAAGATGCAATCTTGATAGAGTACGTAAA GAAGAACGGGGAAGGCAACTGGAATGCTGTTCAGAAGCATTCTGGTCTTTCTCGTTGTGGAAAAAGCTGCCGATTGCGATGGGCCAATCACCTCAGGCCT AACTTGAAGAAAGGAGCATTTACCCAGGAAGAAGAACAGCTAATTATTGAACTTCATGCCAAAATGGGGAACAAATGGGCTCGCATGGCTGCTCATTTGC CTGGACGTACAGACAATGAAATAAAGAACTACTGGAACACCAGAATCAAGAGACGTCTAAGGGCTGGTTTGCCTCTTTACCCCCCTGACTTATCTTCACA ATCATATCGGGATAATCAATGGGATCAAAACATAGGCGCTATGAATTGCGGGCGTAAAGGGCATCATGAGCTCTTGCACAACTGCCATCAGATTCCTGAT GCTACATTTGACAGCTTAAAAGCTAGTCAGATCAGGGTATCTAATTCTCTCCTTGAACTAGCTGATATTAATTCAAGTCAGATGATGATAAAAGGGCAGG GTTCTTCTCAATACGGAAGCTTCATTTCTCCAGTGATGCATAGTAAAAAACGCCTTCGAGAATCAACTTCTCAGTTATCTGGATTCAGCGTTAGTGGAAG AAATGACTTCTCACTGTTTAGCTTTCAGAATGATCTCCGTGAGAAGGCTACTCAGTCCTTTGGATTGTCTTATCCATTTGTTTCTGATCCCAACACCAAG ATTCAGCATCGACACGGTGTTGGTGATGATGATCAGAACGGTCATACCCAGTCGTATGGCATTTTCTCTGCTTCTAAGCCCAATTCCGGGGCTGTGAAGT TGGAGCTCCCTTCACTCCAATATACCGAAAACGATGCAAGCAGCTGCTGGGGAATATCTTCTCCACCACCTCTGCTTGAGTCGTACGATAACTTTATCCA GTCTCTACCTACGAGTACGGTTGGATCAAGTTATCTTTCGCCGCGTAACAGTGGCCTACTTGATGCTTTACTCCACGAGGCGAAAACTCTTAGTACGGCA AAGAAGCATTCCTCTGAGAAGAGTTCGAATTCTTCAACTGTCACCCCTGGAGATATTGCAGACAGTTTGAGTCCTAACGGCCATGATCCAGAGTGGGATA ACTACGGCAACCCACTTTCTCCCACTGCGACATCATATTTCAGTAAACGCAGCACCCCGATCAGTGCCAGTGGAAGTTCGTTAGATGAACAACCACCTAT TGAGACCTTTACTGGTTGTGACATAAAGACGGAAGCTTTGACACCGGAAAGAGAGAGGGACGCCATTACACGTCGACCCGACGCTTTACTTGATTCGGAC TGGCTCGAGCAGGGTTCGGGCAGTAGCTATGTCAAGGATCAAGTGGTGATGACAGATGCCATAGCAGCTCTGCTCGGTGACGATTTGAGCAGTGAATATA AGCAGATGGCTGGAGCAGGTACGTCATCTGGAGCTAGTCAAGGATGGGTACTGGGTTCTTGTGCTTGGAACAACATGCCTCCTTCTCATGTCAAAAGTGT GATTGTAACTGTAGATTGGGACTCACTCCGTGCAAAGCATGCTCATGTGGGCTGGTGTGATCTGATTCGGAGGGGCCCTTGCATCCCAAAACACTGCTTT GTAGCTTGGCTTGCTGTGCATAAACGTTTGGTTACGCACTCGATGATGGTGTCGTGGGGGCTGAGCTTGGACATCTGTTGCTTCCTCTGCTCACATGGTG CTGATGAGCTCACTCATCTGATGGTGGATTGCGATTTCGAGAAGACCGTCCGTAATTTCTGTTTGGGGCGTGATGACACTCTTTTCCTGGATTGGACTGA TTTTGTGGTGCACCATTGTCGAGCCTTCGCTGGCGGTGCATCTGCTTGCTCGGGGCAACTTTTCTCGAGGGCTATCATGAGTGAAATCCCCCTCCCCCCT TCTAGAGAGATTGCTGCTCGTATATGTAGAGACATTGCTTTTGTTGTTCGATAG
AA sequence Show only first row Show all	>Lus10026142 pacid=23173298 polypeptide=Lus10026142 locus=Lus10026142.g ID=Lus10026142.BGIv1.0 annot-version=v1.0 MTIDLVLKPSCRCGSTSNLYGSNCKHMTLCLDCGKKMAETGAKCYDCGAPVTRLIREYNVRATPSSDKNYFIGRFMGGLPSFSKKKSAENKWSIHKEGLQ GRMLSENLRERYKNKPWLLEDETGQHRFHGQMEGSQSVTYYLLMVQGKEFAAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTAEGYERWMMKAAADG PAAFGVKDSLDDADAGTGGTRGRKKASGDNDEGNVSDKGEEDEDDEASRKSRLGLAKRGGDDDEEGKRGGDHDDDDDIEKGDDWEHEEIFTDDDEAVGSD HELPEELAPAPPEIKQDDEDEDEENEEGKLSSSGKELKKLLGKAAGLSDSDGEDDDDDDAEDEISPVLTPKKKEAVKEEPSDNNTPSKTTAAGSTKGNAT TSKSGKEKRKADDFKASNSATPKKAKAEESNLKKVKTEVESKPSVKEEVTPNSKGNSSSKVAPPPAKASSAPASGPVTEEEIKAVLLEGGPITTQELVGR FKSRLKCSEKKMSHMTNESKDCFLPNEQIESPLADEGNSSRKGNGETNLKKGPWTAAEDAILIEYVKKNGEGNWNAVQKHSGLSRCGKSCRLRWANHLRP NLKKGAFTQEEEQLIIELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRLRAGLPLYPPDLSSQSYRDNQWDQNIGAMNCGRKGHHELLHNCHQIPD ATFDSLKASQIRVSNSLLELADINSSQMMIKGQGSSQYGSFISPVMHSKKRLRESTSQLSGFSVSGRNDFSLFSFQNDLREKATQSFGLSYPFVSDPNTK IQHRHGVGDDDQNGHTQSYGIFSASKPNSGAVKLELPSLQYTENDASSCWGISSPPPLLESYDNFIQSLPTSTVGSSYLSPRNSGLLDALLHEAKTLSTA KKHSSEKSSNSSTVTPGDIADSLSPNGHDPEWDNYGNPLSPTATSYFSKRSTPISASGSSLDEQPPIETFTGCDIKTEALTPERERDAITRRPDALLDSD WLEQGSGSSYVKDQVVMTDAIAALLGDDLSSEYKQMAGAGTSSGASQGWVLGSCAWNNMPPSHVKSVIVTVDWDSLRAKHAHVGWCDLIRRGPCIPKHCF VAWLAVHKRLVTHSMMVSWGLSLDICCFLCSHGADELTHLMVDCDFEKTVRNFCLGRDDTLFLDWTDFVVHHCRAFAGGASACSGQLFSRAIMSEIPLPP SREIAARICRDIAFVVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026142 [exp]	0	1
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	1.4	0.9592
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	2.8	0.9462
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10032471 [exp]	3.9	0.9428
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10013816 [exp]	4.9	0.9168
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10024558 [exp]	6.5	0.9220
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	6.9	0.9348
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10008686 [exp]	7.7	0.9428
AT5G11700			unknown protein		Lus10011144 [exp]	7.9	0.8980
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10027600 [exp]	9.9	0.9197
AT4G16144		AMSH3	associated molecule with the S...		Lus10036454 [exp]	10.6	0.8992

Compare expression of checked genes

Lus10026142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.