Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 491 / 2e-153 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 469 / 2e-144 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41540 439 / 1e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 438 / 4e-135 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G18360 432 / 2e-134 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 432 / 9e-132 TAO1 target of AVRB operation1 (.1) AT3G44480 427 / 7e-130 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 425 / 6e-129 disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44670 424 / 1e-128 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G46270 422 / 3e-128 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005588 [exp] 1488 / 0 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10000121 [exp] 952 / 0 AT5G17680 277 / 1e-82 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 584 / 0 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10042465 [exp] 583 / 0 AT5G46490 151 / 3e-40 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029722 [exp] 574 / 0 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10013729 [exp] 551 / 0 AT5G36930 310 / 2e-92 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041060 [exp] 523 / 1e-164 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10038249 [exp] 498 / 7e-158 AT5G17680 445 / 4e-137 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10014829 [exp] 489 / 2e-155 AT5G17680 441 / 1e-136 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 733 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 722 / 0 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 702 / 0 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 640 / 0 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 636 / 0 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G097800 [exp] 605 / 0 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 603 / 0 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 591 / 0 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 577 / 0 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 555 / 0 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF07725 [flax] [poplar] LRR_3 Leucine Rich Repeat CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10026201 pacid=23156627 polypeptide=Lus10026201 locus=Lus10026201.g ID=Lus10026201.BGIv1.0 annot-version=v1.0 ATGTGGATATACTTCCTTCTCATAATCCACTTGCTCACCTTCCTCTGGCAATACACTTACAAACCACGACCAGTCAACCCTCCTCCTCTTCCTGCTGCAG AGTCAACTCTTCACTCCGATTGTCGCAACAACGAAGCAGCAGCTCCAGTTGTGCATAAGTACGATGTGTTCCTCAGTTTCAGAGGAGCAGACACCCGCCT CAATTTCACCAGCCATCTCTATGCAGCTCTCAGAGGCCGGTCAATCCTCAGTTACATCGACGATGTCAACCTCCGGCGAGGTGCGGACATCACCGACACA TTGCTCACAGCGATTGAGCAGTCCAGGATGGCCGTCATTATCTTCTCCGACAACTACGCCTCCTCCGGGTGGTGCCTGGATGAGCTCGTCAAAATCCTCC ACTGCCGGAAACACTTCAGTCAGGTGGTTTTACCGGTCTTCTACGGCGTCTCTTCCTCTAATGTTCAGAATCTTACAGGAAACTGTGCTGCCGCGTTCGC CAAGCTCCGATCATCGCCTTCGTCGTCGCCAGAGAAGTTGAAAATCTGGAAGGCTGCTTTGAGAGAGGCCGCCGATTTACCCGGCTGTAATTCTCTCCAG ATTAGAACAGAGGCCGATCTTGTCAAAATTGTTATTGAAAATGTTCTAGCAACATTGAATCAGATTTGCCCCACACCTCAGTTCACTGGGTTGGTTGGAA TTCATACCCGAATGGATGATATAGAATCCTTATTACAGTTGGAATTGACCTCGAAAACCAGGATTATAGGAATGTGGGGAATGGGTGGTGTGGGCAAAAC CACCCTTACTAGAGCTATATACGATGAATTCTCATCAAAATTTGAAGCGTGTCATTTCCTGGGCAACATAAGGGAAGAATTGGGAAGGCGCTCTGAACTT GGCTTGCAACACGAGCTCTTCTCAAGTATACTGGAGGATGATGATCCCCCAACTCAAAGAAGCACAAATTTGGCACTCACCTTCATGAAAACACGTCTTT CCCGTACCAAAGTTCTCATTGTCCTTGACGATGTTGAGGACCCAGTAGCATTGCACAACTTGTTAGACAAACAGCCTCATACTCTTTTTGGTCCTGGGAG CAGGATCTTGGTGACAAGTAGGGATCACCAGGTTCTTTACAATGTATGTGATGAAGTATACGAGCTCAAGGGACTGGATGACTACGAATCACTTCAACTG TTCACCTCAAATGCTTTCAAAGAAGATCCTACGGAGGAATCTGTAGAGCTTTCATTGAGAGCCATACGTTACCCATCAGGCAACCCCTTGGCGCTTATAG TTCTTGCAAAATCTTTGTATGGGAGGAGTAAGGAGTACTGGGAAAGTGTCTTGGTGAGGCTGCAAAAGGCACCCAATAGAAAAGTTCAGAATGTCTTGAG AATCAGTTACGATGGGTTAGACCGTGAAGAGAAAAGTGCTTTTCTTGATGTTGCTTGCTTCTATAAAGGAGAGAGTCGAGCTCATGTGAAGTCCATGCTA GATGGCTCTTATGGTGATGGGTCATCTGAGAATATCATTACATCGTTGACAGACAGGGCTCTGGTGGGCATTGGGCATGATGGGCGTACAGTTATGATGC ATGATTTGTTGCAGGAGATGGGTCGAGGTATTGTGAATGAGGAATCTGATGATCCAGGAGAACGAAGTAGGCTGTGGAATCCAAACGATGTCTATGATGT GCTTGCTAGAAAAGGGGGAACGAGAAGAATCAAAGGCATATCCATGGAGTTATCTGGTGCAGGAGAGATGCATCTAGACTCCGATGCCTTCGCGAAGATG ACTCGGCTAAGAGTCCTTAGGTTCTATTTGCCACGGGATGGAAACGACAACCACACTGCAATGCTGGTGCCTACAGAGGGCCTTCAATATCTTTCCAATC AGTTGATGAGCATCCATTGGCCTCGATTAAATTCGAGTTCTCTTCCACCAACGTTTTGTGCAGAAAACCTGATTGATCTTCGCCTTCCTTATAGTACCGT CAAGCATCTTTGGACTGGCATCCAGAATCTTGGGAGTTTGAAATACGTTGACCTCAGCTACTGTAAAAACCTGGTGGAGTTGCCTGACTTATCCCATGCC AAAAGAATTGAGGACATGTACCTTTTGGGATGCGAAAGCTTAGAGGGAATCCCATCATATATTCAGCAGCTGGAGAATCTAGCAAACTTCAACATCTGGA ACTGTAAGAGCCTTCCAGATCTTCCAACCCAGTTTACATCAAAATTTATAAACTCTCTGTCTCTATCCGCCGAGAACTGCCCTGCACTCACAAACTATGA GCAAGTATACTTCGGTCCCGATGAACACCATCAGATCGAAGAAGAACCTGATGAAAATGCAGTGATACCCACCAAAGTTCTTGATGTCCGTAACAGCTTG AACATAACTGATCTACGTTTGAATGGAACTGAGATCCAGGAGTTGCCAGCTTCCATTGAGCAGCTCACCGATGTTACCCTCTTGGATATGTCCAACTCCA AGAGTCTCCGATCTGTGTCGACCAATATCTGCAAGTTAAAGAAGCTCGAGACACTTTATTTCTCGGGATGCGTGGGACTGGAGACCTTTCCGGAGATTCT GGAGCCCATGGAAAAACTCTCTCAAGTTTTCTTGGGAGGGACGTCCATCAAAGAGTTGTCATCTTCGTTCGCTCAGAATTTACTGAACATGAGTGGGCTA AGCCTTAACAATTGCAGGAAGCTTGTTAGCCTGCCTGAAGCCATTCAGTTCTGTGAGAAGCTGACGATGCTTGATATCAGGGACTGTGAGAGCCTTGTCT GTTTACCGCCGTTGCCTCCAGGGCTCAAAACATTGAATGCGGATGATTGTGTCTCGCTTAACAGCTTCCCGGATTGCGATTATCTACACGATCTTGTAGC CTTAAGACTGGGAAACTGCTTCCTTCTGGACCAAGATGCAATCACTAAATGGATGCAAGAAGCATGCGCCGACCCTCAGAGAATGGCGGCGGAGATGTAC TTCCCAGGGAGCGAAATCCCAGGTTGCTTTGAGTTTGGAAGTGAAGGATGTGAGATAACAATACGGTTGCCGTCAAATATAGATGACTTGATATATGGAA GCAAAGGAATTGCATACTGTTTAGTTGTGGAGGACGATGGCGGTCCAACATCGTGCTCGGTAGCAAATGCTGATCCCGATAGTCGTGTGGGCAAATATGC AGCCATTATACCATATCTGGAGTGTAATTGGAAGGTGTTGTCGAATGCAGTAGATGGTGGTGGTGGTGGTGGTTATGGTGGCAGATGTTCAGCTGGGACG TGGTATCACAATGCGTTGACGCGTGGCTTTACGCAATTCGAGTCTGATCATTTGTTCATCACTTATAGGAGCAGGGATCACGATAGCCAGCTTTTTTATG CGAGAAATGTGGGGCGTGATGTTTCCTTCAGGTTCCAGTTTTCTGACTGTTGGAAGGTGAAGAAAGTCGGAATCATGATTGTACAGTTTGATTATGGGGA TGTTGGCTTCGATGATGATGATGATGCTATGAGGTTCCAAGAGATGGAATTGGACTGCAGCGAGTCATTATGA
AA sequence Show only first row Show all	>Lus10026201 pacid=23156627 polypeptide=Lus10026201 locus=Lus10026201.g ID=Lus10026201.BGIv1.0 annot-version=v1.0 MWIYFLLIIHLLTFLWQYTYKPRPVNPPPLPAAESTLHSDCRNNEAAAPVVHKYDVFLSFRGADTRLNFTSHLYAALRGRSILSYIDDVNLRRGADITDT LLTAIEQSRMAVIIFSDNYASSGWCLDELVKILHCRKHFSQVVLPVFYGVSSSNVQNLTGNCAAAFAKLRSSPSSSPEKLKIWKAALREAADLPGCNSLQ IRTEADLVKIVIENVLATLNQICPTPQFTGLVGIHTRMDDIESLLQLELTSKTRIIGMWGMGGVGKTTLTRAIYDEFSSKFEACHFLGNIREELGRRSEL GLQHELFSSILEDDDPPTQRSTNLALTFMKTRLSRTKVLIVLDDVEDPVALHNLLDKQPHTLFGPGSRILVTSRDHQVLYNVCDEVYELKGLDDYESLQL FTSNAFKEDPTEESVELSLRAIRYPSGNPLALIVLAKSLYGRSKEYWESVLVRLQKAPNRKVQNVLRISYDGLDREEKSAFLDVACFYKGESRAHVKSML DGSYGDGSSENIITSLTDRALVGIGHDGRTVMMHDLLQEMGRGIVNEESDDPGERSRLWNPNDVYDVLARKGGTRRIKGISMELSGAGEMHLDSDAFAKM TRLRVLRFYLPRDGNDNHTAMLVPTEGLQYLSNQLMSIHWPRLNSSSLPPTFCAENLIDLRLPYSTVKHLWTGIQNLGSLKYVDLSYCKNLVELPDLSHA KRIEDMYLLGCESLEGIPSYIQQLENLANFNIWNCKSLPDLPTQFTSKFINSLSLSAENCPALTNYEQVYFGPDEHHQIEEEPDENAVIPTKVLDVRNSL NITDLRLNGTEIQELPASIEQLTDVTLLDMSNSKSLRSVSTNICKLKKLETLYFSGCVGLETFPEILEPMEKLSQVFLGGTSIKELSSSFAQNLLNMSGL SLNNCRKLVSLPEAIQFCEKLTMLDIRDCESLVCLPPLPPGLKTLNADDCVSLNSFPDCDYLHDLVALRLGNCFLLDQDAITKWMQEACADPQRMAAEMY FPGSEIPGCFEFGSEGCEITIRLPSNIDDLIYGSKGIAYCLVVEDDGGPTSCSVANADPDSRVGKYAAIIPYLECNWKVLSNAVDGGGGGGYGGRCSAGT WYHNALTRGFTQFESDHLFITYRSRDHDSQLFYARNVGRDVSFRFQFSDCWKVKKVGIMIVQFDYGDVGFDDDDDAMRFQEMELDCSESL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17680			disease resistance protein (TI...		Lus10026201 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10000121 [exp]	1.0	0.8186
AT3G07530			unknown protein		Lus10011289 [exp]	6.0	0.7615
AT1G22830			Tetratricopeptide repeat (TPR)...		Lus10003509 [exp]	19.4	0.6506
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10026862 [exp]	20.0	0.7768
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10032614 [exp]	28.4	0.7571
AT3G03560			unknown protein		Lus10005694 [exp]	36.2	0.7488
AT3G52780		ATPAP20, PAP20	Purple acid phosphatases super...		Lus10017057 [exp]	44.9	0.6736
AT3G05350			Metallopeptidase M24 family pr...		Lus10029923 [exp]	48.1	0.7391
AT1G73970			unknown protein		Lus10036972 [exp]	48.2	0.7380
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10020235 [exp]	51.0	0.7421

Compare expression of checked genes

Lus10026201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.