Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10310 383 / 3e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 91 / 1e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G10050 91 / 1e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55290 82 / 3e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G55310 81 / 6e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 81 / 1e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G24360 81 / 1e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G62610 77 / 1e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT1G63380 76 / 3e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G24470 76 / 4e-16 ATKCR2, KCR2 beta-ketoacyl reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042410 [exp] 399 / 3e-142 AT1G10310 304 / 4e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019683 [exp] 87 / 3e-20 AT5G10050 315 / 3e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10015821 [exp] 89 / 7e-20 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 86 / 2e-19 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016430 [exp] 85 / 2e-19 AT5G10050 323 / 8e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012575 [exp] 85 / 2e-19 AT3G26770 353 / 1e-122 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016177 [exp] 84 / 7e-19 AT3G26770 219 / 1e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041518 [exp] 82 / 5e-18 AT3G26770 352 / 2e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009992 [exp] 79 / 2e-17 AT2G47140 345 / 1e-120 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228533 [exp] 396 / 2e-141 AT1G10310 376 / 1e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 90 / 5e-21 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G101900 [exp] 89 / 7e-21 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.008G178700 [exp] 87 / 7e-20 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G086600 [exp] 85 / 3e-19 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 80 / 1e-17 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G099900 [exp] 80 / 2e-17 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.004G200100 [exp] 80 / 2e-17 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 79 / 3e-17 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G102000 [exp] 78 / 1e-16 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10026260 pacid=23156581 polypeptide=Lus10026260 locus=Lus10026260.g ID=Lus10026260.BGIv1.0 annot-version=v1.0 ATGACAGCGGCAGTTGCTGCTTCGTCTTTGGGCCTGGTGAACAGAGCCGGAGGCAGTGGAGGGAAGAAAGTGCTGATAACGGGAGTGAGCAGAGGATTGG GAAGAGCTCTAGCCCAAGAATTAGCCAAGAGAGGTCATACGGTAATCGGTTGCTCTCGAACTCAAGAGAAGCTTAATTCTCTTCAATCCGAGCTTGAATC CTCCGACCGCCACCTCCTTCTCGACGCTGACATTAGGTCGGACAGCAGTGTGGGAGAGCTGGCCCGATTGGTAATGGAGAAGAAGGGCGTTCCTGATATT ATAGTGAACAATGCTGGAACAATTAACAAGAACAACAAGATATGGGAAGTGCCTGAGGAGGAATTCGATGCTGTTATTGATACGAATTTGAAAGGTGTAG CTAATGTATTGCGCCATTTCATCCCCCTAATGCTTCCCAACAAGCAAGGCATCATAGTTAACATCTCTTCTGGATGGGGAAGATCTGGCGCTGCACTGGT TGCACCTTATTGTGCGTCGAAATGGGCAATAGAAGGGCTGTCAAGATCAGTTGCGAAAGAGCTTCCCGATGGAATGGCAATTGTTGCACTTAATCCAGGG GTAATCCATACAGAGATGCTGGCATCATGCTTTGGAACTTCAGCGTCTCTTTACCAGGCCCCTGATGCATGGGCAGTGAAGGCAGCTACCATGATTCTAA ATCTAACTGGTGCAGACAATGGTGCTTCCCTGACTGTGTGA
AA sequence Show only first row Show all	>Lus10026260 pacid=23156581 polypeptide=Lus10026260 locus=Lus10026260.g ID=Lus10026260.BGIv1.0 annot-version=v1.0 MTAAVAASSLGLVNRAGGSGGKKVLITGVSRGLGRALAQELAKRGHTVIGCSRTQEKLNSLQSELESSDRHLLLDADIRSDSSVGELARLVMEKKGVPDI IVNNAGTINKNNKIWEVPEEEFDAVIDTNLKGVANVLRHFIPLMLPNKQGIIVNISSGWGRSGAALVAPYCASKWAIEGLSRSVAKELPDGMAIVALNPG VIHTEMLASCFGTSASLYQAPDAWAVKAATMILNLTGADNGASLTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10310			NAD(P)-binding Rossmann-fold s...		Lus10026260 [exp]	0	1
AT2G18245			alpha/beta-Hydrolases superfam...		Lus10028314 [exp]	25.8	0.6800
AT1G12370		UVR2, PHR1	UV RESISTANCE 2, photolyase 1 ...		Lus10032195 [exp]	27.7	0.7327
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10015320 [exp]	29.2	0.7063
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Lus10012298 [exp]	35.1	0.7587
AT1G73820			Ssu72-like family protein (.1)		Lus10024545 [exp]	37.5	0.7453
AT5G66530			Galactose mutarotase-like supe...		Lus10028310 [exp]	39.0	0.7476
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10013513 [exp]	40.3	0.7469
AT5G17780			alpha/beta-Hydrolases superfam...		Lus10003871 [exp]	51.3	0.7269
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10012007 [exp]	60.8	0.6874
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10029283 [exp]	63.2	0.6677

Compare expression of checked genes

Lus10026260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.