Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34430 461 / 1e-146 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) AT1G21700 181 / 7e-47 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3C (.1) AT2G33610 136 / 8e-34 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) AT2G47620 105 / 1e-23 CHB1, ATSWI3A SWITCH/sucrose nonfermenting 3A (.1) AT4G16420 79 / 5e-15 PRZ1, ADA2B PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) AT3G07740 73 / 5e-13 HXA2, HXA02, HAC10, ATADA2A, ADA2A homolog of yeast ADA2 2A (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042329 [exp] 1514 / 0 AT4G34430 652 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10023583 [exp] 860 / 0 AT4G34430 704 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10040472 [exp] 841 / 0 AT4G34430 694 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10016043 [exp] 162 / 3e-42 AT2G33610 429 / 4e-147 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10029695 [exp] 160 / 1e-40 AT1G21700 666 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042734 [exp] 157 / 4e-39 AT1G21700 736 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10025165 [exp] 155 / 4e-39 AT2G33610 422 / 3e-142 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10032555 [exp] 134 / 9e-33 AT2G47620 371 / 3e-123 SWITCH/sucrose nonfermenting 3A (.1) Lus10043188 [exp] 133 / 3e-32 AT2G47620 382 / 4e-127 SWITCH/sucrose nonfermenting 3A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G114900 [exp] 745 / 0 AT4G34430 727 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.004G153300 [exp] 729 / 0 AT4G34430 711 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.002G080600 [exp] 182 / 2e-47 AT1G21700 679 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.005G180800 [exp] 181 / 7e-47 AT1G21700 692 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.015G100400 [exp] 141 / 5e-35 AT2G47620 395 / 7e-132 SWITCH/sucrose nonfermenting 3A (.1) Potri.002G004800 [exp] 136 / 1e-33 AT2G33610 435 / 3e-149 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Potri.014G166300 [exp] 89 / 6e-18 AT3G07740 582 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Potri.006G017300 [exp] 89 / 6e-18 AT4G16420 640 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.016G007600 [exp] 89 / 7e-18 AT4G16420 602 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.012G038300 [exp] 44 / 0.0006 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [flax] [poplar] C1 PF00569 [flax] [poplar] ZZ Zinc finger, ZZ type CL0123 [flax] [poplar] HTH PF04433 [flax] [poplar] SWIRM SWIRM domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10026334 pacid=23156425 polypeptide=Lus10026334 locus=Lus10026334.g ID=Lus10026334.BGIv1.0 annot-version=v1.0 ATGGAGTCCAAAATGGAGGGTACACCGGCGACAGCTGATTCACCGGCGACAGCCGAACCAGCATCCTCACGCCGCCGAGCCGGAGGGATGAAAAAAAGGA AAGCCAACTCAATGTCGACATCAACCTTCTCGTCCTCCTCCGCACCTTCGAAACGGATGACTCGGGAGAAATCGGCCATGTCGCTCCTCCAATCTCAATT TCACGATGGCCCCTTGACAAGGGCTGCCCGACACACTTCAACTACTTCCGCTTCTTCACCTGGTAACCCGGCGGCTGCTCGCGGCTTGAAGCTCGAGGAG AAGGAAAGGATTGCTTTGGCGGCGGCGGCGGCCACGGCGACGGCAGCTGCTGCAGAGGAGGAGCGGCTGAAATTGGAGGATTTGGAGAAGAAGATTGAGG CAGAGTTTGAAGCCATTATATCTCGTGATTCGAACGCTCACGTGGTACCTAATCACTGCGGGTGGTTTTCATGGAAAAAAGTTCACCTTTTGGAGGAGCG AGCATTGCCTACTTTCTTTAATGGGAAATCCCAAAGTCGAACACCTGACACATACTTGGAGATTCGCAATTCGATCGTTAAGAAGTTCCATTTGAACCCA AATGAACAGATTGAGTTGAAAGATTTATCGGATCTTGAAGTTGCAGACACGGATGCGAGGCAGGAGGTGCTAGAGTTCTTGGACTATTGGGGATTGATTA ATTTCCATCCTTTTCCAGAAACGGATGCTTCTGGAAATTCTTGGGGTGATTTACCTACAGAGGATTCATTGCTTGAGAAGTTATTCCAGTTTGGACCTGT TCTGTCAAGTCCAAATGTCGTTTCTAAGCCTAGTTTGGCAACTACGGCTGTATCATCTAGTTTGTGTCCAGATCCTGCAATTGCAGAAGAGTTGTTGCGG CCAGAGGGACCATCAGTGGAGTATCATTGTAATTCTTGTTCAGCTGATTGCTCTCGGGAACGTTACCACTGCCAAACGCAGGCAGATTATGATTTGTGTG CTGATTGCTTTAGTAATGGGAAGTTTGACCCGGACATGTCATCTTCAGATTTTATTCTCATGGAGCCTGCCGAGGCTCCTAGTCTAAGTGGAGGAAAGTG GACGGATCAAGAGACCCTGCTTCTCCTCGAGGCATTGGAAATTTTCGAAGGAAAAGACTGGAACGAGATCGCAGAGCATGTTGCAACAAAATCAAAAGCT CAGTGTATCTTGCACTTTGTTCAAATGCCAATTGAGGATGCTTTTTTTGATTGTGATGATATGAAGGATAGTCAAAAGGAAATAGCTGACACAGGTGCAA CCAATGAAACTGCCCCTGAAACAAGTGATGTTAAAATAGATTCCAAGGAGGACCAGAGTCGAATGTCTCCAATGGAGAATTCAAACCCAGAAGATACCGA AGAAATGAATGATATTTCTGAGAATGACAGCGAAGGAAAGAAAGCTGATCAAATTTCAAAACCAGATACTGTCGAAGGGAAGCAAGGTGATCAAGTTTCA AAACCAGATACTAATGAGGGGAAGCCTACTTCAGAAACTTCAAAACTAGATGCTGGTGAAAAGTCTGGTGAAGATGTTGCACTAAGAGCTCTAACAGAAG CATTTGATGCTGTCAGTTATGTTTCTAATTCTGGCTTATCATTTGCTGAAGTTGGAAATCCGGTCATGGCCTTGGCAGCATTTCTTGTGAGATTGGTTGG AGGTGATGTGGTTTCTGCTTCAGCTCGTAATTCTCTCAAGTCATTATCAAGCAGTTCTCCTGGAGTGCAGCTTGCACTACGACATTGCTTTCTTTTGGAA GATCCACCAGATAGTGGAAATGAGAAAGAAGATAGTGACTGTGCTGAGGGCGCTGAACAGAATGCTCCCATAGAGTACCAGGACGAGAAGAACCAGTCGG CAAGTGGCCCGTGTAATATCGAAAGCAAGGTTTCTTGTGATGAAGAAAACAAATTAATCGATTCCTCAAATGATGAATCCAATGAAAAGGAAAAGACTAT TAATGAAGTAGGTCTCGGAGACATTCATGATGAAAGTGATACTCATACGTCGGAGGATCCAAGCAATTCTGACCAACCAGACAACACGATGAATGAATTA TCCTCACCAGAGTCTACGAAGGAGCATCAAGAAGGATCTTCTGCAGTTGTACGTTCAGAGCTTAAAGAAATGGGTGGCAATGTAGAGATGGTCCCTGGCT CTAGAACTTCAGAGAACATGCAACCATCTACGTCACCTGAAGAGCCAGCTCAAGCTGGGGAGGTGCAAAAAGATGCAGGCATTCTGTCAGATGCTCTTCC TGTAGATAACAATGAGATTGAGGATCAAGAAAAACCAAGTTTTACCACAGATAACATTGAACCAGTAGTGATCCCGAAGGATATTGACAAACTAAAACGT GCTGGAGTTGCTGCATTGTCCGCAGCTGCCGTGAAGGCAAAGCTTCTTGCATATCAAGAGGAGGACCAAATCCGCCAACTTGCTGCAGCGCTCATAGAAA AGCAGTTACACAAACTTGAAATGAAGCTGGCTTTCTTCAATGATATGGACACTGTGATTATGAGGGTCAAGCAGCAACTGGACAGATGCAGGCAGAGACT TTACCATGATAGAACACAAATAATTGCAGCTCGCCTTGGTCTTGCAGCTTCGTCATCTAATCCTGGCCAACCCAGTCGAACTGGTAACAGACTTGCAATG AACATCACTGGTGCATTTCCGAGGCCACCTATAGGCTTTGCTTCCCAAAGGCCACCAATTTCAGGACCAGAGCTGGGAGCAGCGGCGACCAGTGGTTCTC ACCACATTAACCCTCGTGGGGGTGCAAATTCAATTAGGCCTTCCAGCCAGGATACACTCTCTTCAGTTGGTTCAAAGTAG
AA sequence Show only first row Show all	>Lus10026334 pacid=23156425 polypeptide=Lus10026334 locus=Lus10026334.g ID=Lus10026334.BGIv1.0 annot-version=v1.0 MESKMEGTPATADSPATAEPASSRRRAGGMKKRKANSMSTSTFSSSSAPSKRMTREKSAMSLLQSQFHDGPLTRAARHTSTTSASSPGNPAAARGLKLEE KERIALAAAAATATAAAAEEERLKLEDLEKKIEAEFEAIISRDSNAHVVPNHCGWFSWKKVHLLEERALPTFFNGKSQSRTPDTYLEIRNSIVKKFHLNP NEQIELKDLSDLEVADTDARQEVLEFLDYWGLINFHPFPETDASGNSWGDLPTEDSLLEKLFQFGPVLSSPNVVSKPSLATTAVSSSLCPDPAIAEELLR PEGPSVEYHCNSCSADCSRERYHCQTQADYDLCADCFSNGKFDPDMSSSDFILMEPAEAPSLSGGKWTDQETLLLLEALEIFEGKDWNEIAEHVATKSKA QCILHFVQMPIEDAFFDCDDMKDSQKEIADTGATNETAPETSDVKIDSKEDQSRMSPMENSNPEDTEEMNDISENDSEGKKADQISKPDTVEGKQGDQVS KPDTNEGKPTSETSKLDAGEKSGEDVALRALTEAFDAVSYVSNSGLSFAEVGNPVMALAAFLVRLVGGDVVSASARNSLKSLSSSSPGVQLALRHCFLLE DPPDSGNEKEDSDCAEGAEQNAPIEYQDEKNQSASGPCNIESKVSCDEENKLIDSSNDESNEKEKTINEVGLGDIHDESDTHTSEDPSNSDQPDNTMNEL SSPESTKEHQEGSSAVVRSELKEMGGNVEMVPGSRTSENMQPSTSPEEPAQAGEVQKDAGILSDALPVDNNEIEDQEKPSFTTDNIEPVVIPKDIDKLKR AGVAALSAAAVKAKLLAYQEEDQIRQLAAALIEKQLHKLEMKLAFFNDMDTVIMRVKQQLDRCRQRLYHDRTQIIAARLGLAASSSNPGQPSRTGNRLAM NITGAFPRPPIGFASQRPPISGPELGAAATSGSHHINPRGGANSIRPSSQDTLSSVGSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10026334 [exp]	0	1
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10042734 [exp]	1.0	0.9308
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10017973 [exp]	4.1	0.8823
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10038518 [exp]	5.1	0.8678
AT3G10650		AtNUP1	unknown protein		Lus10028861 [exp]	5.3	0.8885
AT3G06530			ARM repeat superfamily protein...		Lus10039121 [exp]	6.3	0.9260
AT1G74580			Pentatricopeptide repeat (PPR)...		Lus10038974 [exp]	6.3	0.8554
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	6.7	0.9086
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10036506 [exp]	8.0	0.9188
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10019778 [exp]	9.8	0.9222
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10008726 [exp]	10.4	0.8927

Compare expression of checked genes

Lus10026334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.