Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18330 160 / 2e-45 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) AT5G17300 145 / 2e-39 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1) AT5G37260 125 / 6e-33 MYB RVE2, CIR1 REVEILLE 2, CIRCADIAN 1, Homeodomain-like superfamily protein (.1) AT3G10113 126 / 7e-33 MYB Homeodomain-like superfamily protein (.1) AT2G46830 122 / 3e-30 MYB AtCCA1, CCA1 circadian clock associated 1 (.1.2) AT1G01060 122 / 5e-30 MYB LHY, LHY1 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) AT3G09600 100 / 1e-23 MYB LCL5 (LHY-CCA1-LIKE5), REVEILLE 8 (RVE8) REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) AT1G01520 95 / 5e-22 MYB ASG4 ALTERED SEED GERMINATION 4, Homeodomain-like superfamily protein (.1) AT4G01280 95 / 8e-22 MYB Homeodomain-like superfamily protein (.1.2) AT5G52660 95 / 2e-21 MYB Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042292 [exp] 672 / 0 AT1G18330 198 / 5e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10031893 [exp] 335 / 3e-112 AT3G10113 207 / 2e-63 Homeodomain-like superfamily protein (.1) Lus10031322 [exp] 327 / 3e-109 AT1G18330 199 / 4e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10030184 [exp] 119 / 9e-30 AT1G01060 247 / 2e-75 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10005134 [exp] 119 / 7e-29 AT1G01060 377 / 5e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10010100 [exp] 119 / 9e-29 AT1G01060 399 / 4e-130 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10007914 [exp] 101 / 1e-23 AT5G52660 301 / 8e-101 Homeodomain-like superfamily protein (.1.2) Lus10014015 [exp] 100 / 5e-23 AT3G09600 317 / 3e-106 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Lus10019902 [exp] 100 / 5e-23 AT3G09600 351 / 9e-121 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G038300 [exp] 242 / 2e-75 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.015G030400 [exp] 241 / 3e-75 AT1G18330 170 / 1e-48 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.004G074300 [exp] 189 / 3e-55 AT5G17300 218 / 5e-66 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.017G144800 [exp] 179 / 3e-51 AT5G17300 200 / 2e-59 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.014G106800 [exp] 121 / 1e-29 AT1G01060 378 / 3e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.002G180800 [exp] 120 / 4e-29 AT1G01060 369 / 1e-117 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.016G083900 [exp] 100 / 3e-23 AT3G09600 375 / 4e-131 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.006G133000 [exp] 99 / 4e-23 AT3G09600 379 / 1e-132 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.002G163100 [exp] 97 / 3e-22 AT4G01280 266 / 1e-87 Homeodomain-like superfamily protein (.1.2) Potri.014G089300 [exp] 97 / 4e-22 AT4G01280 293 / 2e-98 Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10026365 pacid=23156494 polypeptide=Lus10026365 locus=Lus10026365.g ID=Lus10026365.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCTCAGGATGAAGTTCAAGAAGCTCTACCTAACCAAGTCGATGGAGGTGAACAAATGATGGAAATGAATTCATTTGGGAGTCAGCAGCTGC CCAAGCCGAGGAAGCCGTACACTGTCTCCAAACAGAGGGAGAAGTGGACTGAAGAGGAGCACCAGAAGTTCCTCGAAGCTCTGAAGCTATATGGCCGTGG CTGGCGTAAGATTCAAGAACATGTAGGCACCAAAACTGCTGTTCAAATCCGAAGCCATGCCCAGAAGTTCTTCTCCAAGGTTGTCAGAGAGACAACTGTC GGCGCAGAGAGCTCCATTAAACCAATTGAGATACCCCCTCCTCGTCCAAAGAGGAAACCTTTGCATCCTTATCCTCGTAAATGTGTCGATGGTCTCTCGG ATCAGTTCGAAAGATCTCAGTCCCCAAATTTATTGGGCATTGAGAAGGAAAACCGTTCTCCAACTACTGTATTGGAGCCTCGAAATGGTTGCTCCTCATC ATCCACCAGTGATATGCAGAGCTCCAGCATGCCACCAAATGAGAAAGATAGCGAACCCATTATGTCAAATTCATCCCCACGTGAAGGAAATGGATCCTCA TCACCATTGTACGACTCCACACCAGAAGAATTACCCATGGAATTGGAGGCCAGTTTGAAGACTGCAGCATTCGCTGAAAATGAGAAAGCTGTGGTACCGG TCACCCGGTCAAGGAGCTTCAAGCTTTTTGGACGGACAGTGTTGGTTCTGGATTCCGAGAAGGCATCTAGTCAACAGGATTGCATAGGTGTTAAGCTGTC CCTCGGCTTGGTCAATCCTGACTCGAACTGGTTACCATCCGATCCTGAGGCTTCATGCACCAAAGATAAGCTGGAAAATACTGCAGAAGCCAACTGTTCA CTGTCACCATGGGGTTTATCCCACTGTTTATTGGATAATTACTTGCAACAACCAATTATGGGAAACAATTTGATGGAAAGGGAAGCTGTAGATGAAAGGT TCTGCACTGGCTCAGATGCCGGATCAACAAATGAAGTAGAAAACAGGGAGAAATCCACGGATGTAGTGGATTCACAACCTGAAGAAAGATTGTCCAATGT AAGAAGCTATTCTAGTAGGGGTTTCATGCCATACAAGAGATGTTTAGCCGAGAGGGACATGAAATCAACGCTGGCTGCATCGGAAGAACGAGACCAGCAA CGAGCTCGAGTATGCTCTTAG
AA sequence Show only first row Show all	>Lus10026365 pacid=23156494 polypeptide=Lus10026365 locus=Lus10026365.g ID=Lus10026365.BGIv1.0 annot-version=v1.0 MAASQDEVQEALPNQVDGGEQMMEMNSFGSQQLPKPRKPYTVSKQREKWTEEEHQKFLEALKLYGRGWRKIQEHVGTKTAVQIRSHAQKFFSKVVRETTV GAESSIKPIEIPPPRPKRKPLHPYPRKCVDGLSDQFERSQSPNLLGIEKENRSPTTVLEPRNGCSSSSTSDMQSSSMPPNEKDSEPIMSNSSPREGNGSS SPLYDSTPEELPMELEASLKTAAFAENEKAVVPVTRSRSFKLFGRTVLVLDSEKASSQQDCIGVKLSLGLVNPDSNWLPSDPEASCTKDKLENTAEANCS LSPWGLSHCLLDNYLQQPIMGNNLMEREAVDERFCTGSDAGSTNEVENREKSTDVVDSQPEERLSNVRSYSSRGFMPYKRCLAERDMKSTLAASEERDQQ RARVCS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10026365 [exp]	0	1
AT3G12320			unknown protein		Lus10024129 [exp]	1.4	0.9099
AT3G12320			unknown protein		Lus10005384 [exp]	2.4	0.8329
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10030183 [exp]	2.4	0.8735
AT5G39660	DOF	CDF2, AtDof5. 2	cycling DOF factor 2 (.1.2)		Lus10036760 [exp]	2.8	0.8236
AT5G39660	DOF	CDF2, AtDof5. 2	cycling DOF factor 2 (.1.2)		Lus10037167 [exp]	3.5	0.8108
AT3G54500			unknown protein		Lus10024170 [exp]	6.3	0.8138
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10030184 [exp]	8.0	0.7724
AT4G38960	CO		B-box type zinc finger family ...		Lus10031087 [exp]	8.8	0.7769
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10005134 [exp]	10.0	0.7625
AT3G54500			unknown protein		Lus10039553 [exp]	10.4	0.7213

Compare expression of checked genes

Lus10026365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.