Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30210 528 / 0 LAC3 laccase 3 (.1) AT5G07130 506 / 2e-177 LAC13 laccase 13 (.1) AT5G05390 491 / 2e-171 LAC12 laccase 12 (.1) AT2G40370 471 / 3e-163 LAC5 laccase 5 (.1) AT2G29130 355 / 8e-118 LAC2, ATLAC2 laccase 2 (.1) AT5G60020 343 / 4e-113 LAC17, ATLAC17 laccase 17 (.1) AT5G09360 334 / 6e-110 LAC14 laccase 14 (.1) AT5G03260 333 / 9e-110 LAC11 laccase 11 (.1) AT2G46570 329 / 9e-108 LAC6 laccase 6 (.1) AT2G38080 327 / 3e-107 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026401 [exp] 649 / 0 AT2G30210 518 / 0.0 laccase 3 (.1) Lus10042249 [exp] 620 / 0 AT2G30210 696 / 0.0 laccase 3 (.1) Lus10007532 [exp] 472 / 5e-165 AT2G40370 804 / 0.0 laccase 5 (.1) Lus10009841 [exp] 472 / 9e-165 AT5G05390 811 / 0.0 laccase 12 (.1) Lus10017426 [exp] 469 / 8e-164 AT2G40370 805 / 0.0 laccase 5 (.1) Lus10040957 [exp] 468 / 1e-162 AT5G05390 810 / 0.0 laccase 12 (.1) Lus10042252 [exp] 456 / 1e-161 AT5G05390 368 / 5e-125 laccase 12 (.1) Lus10007531 [exp] 458 / 3e-159 AT2G40370 799 / 0.0 laccase 5 (.1) Lus10017427 [exp] 457 / 6e-158 AT2G40370 894 / 0.0 laccase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G152700 [exp] 555 / 0 AT2G30210 916 / 0.0 laccase 3 (.1) Potri.019G124300 [exp] 540 / 0 AT2G30210 845 / 0.0 laccase 3 (.1) Potri.010G183600 [exp] 493 / 5e-172 AT2G40370 937 / 0.0 laccase 5 (.1) Potri.008G073700 [exp] 488 / 5e-170 AT2G40370 946 / 0.0 laccase 5 (.1) Potri.010G183500 [exp] 473 / 5e-164 AT5G05390 915 / 0.0 laccase 12 (.1) Potri.008G073800 [exp] 465 / 8e-161 AT5G05390 893 / 0.0 laccase 12 (.1) Potri.004G156400 [exp] 367 / 6e-123 AT5G03260 877 / 0.0 laccase 11 (.1) Potri.006G094100 [exp] 357 / 1e-118 AT3G09220 691 / 0.0 laccase 7 (.1) Potri.006G087500 [exp] 355 / 5e-118 AT5G60020 806 / 0.0 laccase 17 (.1) Potri.007G023300 [exp] 355 / 6e-118 AT5G03260 889 / 0.0 laccase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10026400 pacid=23156457 polypeptide=Lus10026400 locus=Lus10026400.g ID=Lus10026400.BGIv1.0 annot-version=v1.0 ATGGAGCTTCTTCGAAACTCGAGAGCCAAGCAAACCTCAGCCGATACCCATCTCTGCTTACTTGCTCTTACTTTTGTCTTCACATTTGGCCTTTTAGCTT CATTCTCTGAAGCTAAAGTTCACTACCATGATTTCATCCCAGGCGATTTCTACAGATGCTCCAATAAAGAAACAGTGAAGCTCCCAGTGGTTGCAGGGGA AACAATACTCCTCAGAATCATAAATGGTGCAATGAACCAAGAACTCTTCTTTTCGGTGGCCAACCACAAGCTCACTGTTGTGGAAGCTGATGCTTCCTAC ACAAAGCCTTTCACAACTTCTGTCATAATGGTTGGTCCTGCCCAGACAACCAATGTTCTCCTGAAAGCCGACCAGACCCCTGGCCAATATTACATGGCAG CTCGAGCTTATCAGACAGCACAGAACACAGCTTTTGACAACACCACCACCACTGCAATCCTCGAATACAAATCTACAAAAGGAAAAACCTCTCCGGTTCT GCCTCAGCTTCCGGCCTTCAACGACACTAACACTGCAAGGACATTCACTTCCCAAGTCAGGAGCCTTACATCCAATGTGAATGTACCCAAAAAGATCGAT AAATCCTTGTTCTTCACCGTGGGGCTAGGGTTGAACAATTGTACCAAACTGAACAGCCCTCGTTGCCAAGGTCCAAACGGCACCAGATTCACCGCAAGCA TCAACAATGTGTCGTTCGTGTTTCCCAGGAGGAATTCCCTGATGCAAGCCTATGTCCAGGGTCAACCGGGAATCTTCACCACTGACTTCCCTTCTTCACC TCCGGTGAAGTTCGATTACACGGGGAACGTCAGCAGGGGATTATGGCAGCCTAGTCGAGGGACTAAGCTTGTTAAGCTCAAGTACGGTGACAATGTGCAG ATAGTGTTGCAGGACACTAGCATCGTGACGACTGAGGATCACCCCATGCATCTCCATGGATACTCTTTCTACGTAGTTGGGATGGGTACTGGAAACTTCA ATGCAGCCACTGATACTGCTAACTTCAACCTCGTCGATCCTCCACATAGGAACACCATCGGAACCCCTCCCGGGGGTTGGGTCGCCATAAGATTTAAGGC TGATAATCCAGGAATCTGGCTGTTGCATTGCCACATTGATTCGCATTTGGGCTGGGGATTGGCGACGGCATTGCTTGTTGAGAATGGAGTGGGGAAATTG CAGGCTGTTCAGGCTGCACCACTTGATCTGCCCCGTTGTTGA
AA sequence Show only first row Show all	>Lus10026400 pacid=23156457 polypeptide=Lus10026400 locus=Lus10026400.g ID=Lus10026400.BGIv1.0 annot-version=v1.0 MELLRNSRAKQTSADTHLCLLALTFVFTFGLLASFSEAKVHYHDFIPGDFYRCSNKETVKLPVVAGETILLRIINGAMNQELFFSVANHKLTVVEADASY TKPFTTSVIMVGPAQTTNVLLKADQTPGQYYMAARAYQTAQNTAFDNTTTTAILEYKSTKGKTSPVLPQLPAFNDTNTARTFTSQVRSLTSNVNVPKKID KSLFFTVGLGLNNCTKLNSPRCQGPNGTRFTASINNVSFVFPRRNSLMQAYVQGQPGIFTTDFPSSPPVKFDYTGNVSRGLWQPSRGTKLVKLKYGDNVQ IVLQDTSIVTTEDHPMHLHGYSFYVVGMGTGNFNAATDTANFNLVDPPHRNTIGTPPGGWVAIRFKADNPGIWLLHCHIDSHLGWGLATALLVENGVGKL QAVQAAPLDLPRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30210		LAC3	laccase 3 (.1)		Lus10026400 [exp]	0	1
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10019789 [exp]	1.0	0.7831
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10026419 [exp]	2.0	0.7734
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10030027 [exp]	8.5	0.7347
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10042334 [exp]	12.0	0.7686
AT5G19640			Major facilitator superfamily ...		Lus10013736 [exp]	13.6	0.6720
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10005539 [exp]	13.6	0.7079
					Lus10003442 [exp]	20.0	0.6714
AT3G20190			Leucine-rich repeat protein ki...		Lus10034795 [exp]	22.8	0.6473
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10013419 [exp]	31.4	0.7005
AT4G05220			Late embryogenesis abundant (L...		Lus10018376 [exp]	33.4	0.7145

Compare expression of checked genes

Lus10026400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.