Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30210 473 / 3e-165 LAC3 laccase 3 (.1) AT5G07130 446 / 6e-155 LAC13 laccase 13 (.1) AT5G05390 422 / 1e-145 LAC12 laccase 12 (.1) AT2G40370 404 / 3e-138 LAC5 laccase 5 (.1) AT2G29130 302 / 2e-98 LAC2, ATLAC2 laccase 2 (.1) AT2G38080 296 / 3e-96 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G03260 293 / 4e-95 LAC11 laccase 11 (.1) AT5G60020 293 / 6e-95 LAC17, ATLAC17 laccase 17 (.1) AT2G46570 291 / 3e-94 LAC6 laccase 6 (.1) AT5G09360 291 / 4e-94 LAC14 laccase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026400 [exp] 624 / 0 AT2G30210 553 / 0.0 laccase 3 (.1) Lus10042249 [exp] 592 / 0 AT2G30210 696 / 0.0 laccase 3 (.1) Lus10009841 [exp] 410 / 1e-141 AT5G05390 811 / 0.0 laccase 12 (.1) Lus10007532 [exp] 408 / 4e-141 AT2G40370 804 / 0.0 laccase 5 (.1) Lus10017426 [exp] 406 / 4e-140 AT2G40370 805 / 0.0 laccase 5 (.1) Lus10040957 [exp] 404 / 5e-139 AT5G05390 810 / 0.0 laccase 12 (.1) Lus10007531 [exp] 399 / 3e-137 AT2G40370 799 / 0.0 laccase 5 (.1) Lus10017427 [exp] 398 / 1e-135 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10042252 [exp] 340 / 3e-117 AT5G05390 368 / 5e-125 laccase 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G152700 [exp] 487 / 7e-171 AT2G30210 916 / 0.0 laccase 3 (.1) Potri.019G124300 [exp] 475 / 4e-166 AT2G30210 845 / 0.0 laccase 3 (.1) Potri.010G183600 [exp] 431 / 6e-149 AT2G40370 937 / 0.0 laccase 5 (.1) Potri.008G073700 [exp] 426 / 9e-147 AT2G40370 946 / 0.0 laccase 5 (.1) Potri.010G183500 [exp] 410 / 2e-140 AT5G05390 915 / 0.0 laccase 12 (.1) Potri.008G073800 [exp] 402 / 2e-137 AT5G05390 893 / 0.0 laccase 12 (.1) Potri.004G156400 [exp] 322 / 3e-106 AT5G03260 877 / 0.0 laccase 11 (.1) Potri.007G023300 [exp] 311 / 2e-102 AT5G03260 889 / 0.0 laccase 11 (.1) Potri.006G087500 [exp] 307 / 2e-100 AT5G60020 806 / 0.0 laccase 17 (.1) Potri.009G102700 [exp] 305 / 7e-100 AT5G03260 881 / 0.0 laccase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10026401 pacid=23156600 polypeptide=Lus10026401 locus=Lus10026401.g ID=Lus10026401.BGIv1.0 annot-version=v1.0 ATGAACCAAGAACTCTTCTTTTCGGTGGCCAACCACAAGCTCACTGTTGTGGAAGCTGATGCTTCCTACACAAAGCCTTTCACAACTTCTGTCATAATGG TTGGCCCTGCCCAGACAACCAATGTTCTCCTGAAAGCCGACCAGACCCCTGGCCGATATTACATGGCAGCTCGAGCTTATCAGACAGCACAGAACGCAGC TTTCGACAACACCACCACCACTGCAATCCTCGAATACAAATCTACAAAAGGAAGGACCTCTCCGGTTCTGCCTCAGCTTCCGGCCTTCAACGACACTAAC ACTGCAAGGACGTTCACTTCCCAAGTCAGGAGCCTTAAATCCAATGTGAATGTACCCAAAAAGATCAATAAATCCTTGTTCTTCACCGTGGGGCTAGGGT TGAACAACTGTACCAATCCGAACAGCCCTCGCTGCCAGGGTCCAAACGGGACCAGATTCACCGCAAGCATCAACAATGTGTCGTTCGTGTTTCCCAGGAG GAATTCCCTGATGCAAGCCTATGTCCAGGGTCAACCGGGAATCTTCACCACTGACTTCCCTTCTTCACCTCCGGTGAAGTTCGATTACACGGGGAACGTG AGCAGGGGATTGTGGCAGCCTAGTCGAGGGACCAAGCTTGTTAAGCTCAAGTATGGTGACAATGTGCAGATAGTGTTGCAGGACACTAGCATCGTGACGA CTGAGGATCACCCCATGCATCTCCATGGATACTCTTTCTACGTAGTTGGGATGGGTACTGGAAACTTCAATGCAGCCACTGATACTGCTAACTTCAACCT CGTCGATCCTCCACATAGGAACACCATCGGAACCCCTCCCGGGGGATGGGTCGCCATAAGATTTAAGGCTGATAATCCAGGAATCTGGCTGCTGCATTGC CACATTGATTCGCATTTGGGCTGGGGATTGGCGACGGCATTGCTTGTTGAGAATGGAGTGGGGAAATTGCAGGCTGTTCAGGCTGCACCACTGGATCTGC CCAGATGTTAG
AA sequence Show only first row Show all	>Lus10026401 pacid=23156600 polypeptide=Lus10026401 locus=Lus10026401.g ID=Lus10026401.BGIv1.0 annot-version=v1.0 MNQELFFSVANHKLTVVEADASYTKPFTTSVIMVGPAQTTNVLLKADQTPGRYYMAARAYQTAQNAAFDNTTTTAILEYKSTKGRTSPVLPQLPAFNDTN TARTFTSQVRSLKSNVNVPKKINKSLFFTVGLGLNNCTNPNSPRCQGPNGTRFTASINNVSFVFPRRNSLMQAYVQGQPGIFTTDFPSSPPVKFDYTGNV SRGLWQPSRGTKLVKLKYGDNVQIVLQDTSIVTTEDHPMHLHGYSFYVVGMGTGNFNAATDTANFNLVDPPHRNTIGTPPGGWVAIRFKADNPGIWLLHC HIDSHLGWGLATALLVENGVGKLQAVQAAPLDLPRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30210		LAC3	laccase 3 (.1)		Lus10026401 [exp]	0	1
AT2G30210		LAC3	laccase 3 (.1)		Lus10042249 [exp]	1.7	0.9522
AT2G21100			Disease resistance-responsive ...		Lus10034479 [exp]	3.7	0.9360
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10002593 [exp]	4.9	0.9005
AT5G14230			unknown protein		Lus10036990 [exp]	6.3	0.9225
					Lus10002087 [exp]	6.5	0.9284
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10009029 [exp]	8.9	0.9028
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	10.7	0.9209
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10005885 [exp]	11.7	0.8935
AT3G55230			Disease resistance-responsive ...		Lus10003301 [exp]	12.2	0.9196
AT3G18180			Glycosyltransferase family 61 ...		Lus10016707 [exp]	12.5	0.8803

Compare expression of checked genes

Lus10026401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.