Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51680 349 / 9e-121 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 233 / 6e-76 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47140 231 / 2e-75 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 227 / 1e-73 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 223 / 2e-71 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 222 / 2e-71 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 219 / 1e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 217 / 1e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 211 / 4e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 207 / 1e-64 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029438 [exp] 384 / 2e-134 AT3G51680 396 / 3e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022756 [exp] 384 / 4e-134 AT3G51680 397 / 2e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009992 [exp] 248 / 1e-81 AT2G47140 345 / 1e-120 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016997 [exp] 248 / 3e-81 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038057 [exp] 247 / 4e-81 AT2G47140 341 / 4e-119 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021320 [exp] 245 / 3e-80 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 237 / 5e-77 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019777 [exp] 235 / 3e-76 AT1G52340 391 / 3e-138 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016354 [exp] 235 / 3e-76 AT1G52340 389 / 4e-137 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105900 [exp] 369 / 1e-128 AT3G51680 412 / 4e-146 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G129100 [exp] 365 / 4e-127 AT3G51680 383 / 3e-134 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G125600 [exp] 353 / 1e-122 AT3G51680 394 / 8e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 277 / 5e-93 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 265 / 4e-88 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 262 / 7e-87 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 253 / 3e-83 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 249 / 5e-82 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 248 / 2e-81 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G024300 [exp] 246 / 7e-81 AT1G52340 408 / 6e-145 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10026419 pacid=23156571 polypeptide=Lus10026419 locus=Lus10026419.g ID=Lus10026419.BGIv1.0 annot-version=v1.0 ATGCTTGCTCGTCCTCAAGTGCTACCGCCGCCAGCTTCTGCTGAGGCAAACCTTCAAGGGTTAAGTACTACCACTAGTACCATCCCAAAGGATAACTCAT CATCTCATTTCTCCCTTCAAAGGTTGGAAGGAAAGGTGGCGATAATAACCGGCGGAGCCAGAGGCATCGGAGAAGCAACGGTGAGACTCTTCGCCAAACA CGGTGCCAAAGTCGTGATCGCCGACATCCAAGACTCTCTCGGCCACGCTTTACTCCATTCCTTAACTAATACTACATCTTCTTCAATCATCTGCGTACAC TGCGACGTCAGCTCCGAGGAAGACGTCGAAAACCTCGTAGCCTCGACGCTTTCGAAATTCGGCCGCCTTGATATCCTGGTCAACAACGCCGGCATCCTTG GCAGCCAAGCCCCAGGCGCCAAGTCCATCATGGACTTCGACGCCGAGGAGTTCGAGAGGGTCATGCGGGTCAACGTGAAGGGGACCGCCTTATGCATGAA GCACGCCGCGCGTGCCATGCTGGCAGCAGGAGGAGGGTGCATTGTATCGACTGCCAGCGTGGCAGGGGTGATGGGAGGGATGGGCCCCCACGCGTACACG TCGTCGAAGCATGCGGTGGTGGGGTTGACGAAGAATGCGGCGTGTGACTTGGGGAAGTATGGGATTAGGGTGAACTGCATTTCGCCGTTTGGGGTGGCTA CTTCTATGTTGGTGAATGCTTGGAAGGATGGAGGAGGTGGCGGTGCTGTGACGGAGGGAGAGGTGGAGGAGATGGAGGAGTTGGTGAGGAGGCTGGCGAA CTTGAAAGGCGGAGCGACGTTGAAGGCGGAGGATGTGGCGGAGGCGGCACTGTATCTGGCGAGTGATGAGTCCAAGTATGTTAGTGGACATAATTTGGTG GTGGATGGTGGGTTTACAAGCTCAAACAACTGCGTTGGTTTATGA
AA sequence Show only first row Show all	>Lus10026419 pacid=23156571 polypeptide=Lus10026419 locus=Lus10026419.g ID=Lus10026419.BGIv1.0 annot-version=v1.0 MLARPQVLPPPASAEANLQGLSTTTSTIPKDNSSSHFSLQRLEGKVAIITGGARGIGEATVRLFAKHGAKVVIADIQDSLGHALLHSLTNTTSSSIICVH CDVSSEEDVENLVASTLSKFGRLDILVNNAGILGSQAPGAKSIMDFDAEEFERVMRVNVKGTALCMKHAARAMLAAGGGCIVSTASVAGVMGGMGPHAYT SSKHAVVGLTKNAACDLGKYGIRVNCISPFGVATSMLVNAWKDGGGGGAVTEGEVEEMEELVRRLANLKGGATLKAEDVAEAALYLASDESKYVSGHNLV VDGGFTSSNNCVGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10026419 [exp]	0	1
AT2G30210		LAC3	laccase 3 (.1)		Lus10026400 [exp]	2.0	0.7734
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Lus10000998 [exp]	2.0	0.7585
AT1G03290			unknown protein		Lus10028006 [exp]	2.4	0.7616
AT4G05220			Late embryogenesis abundant (L...		Lus10018376 [exp]	3.0	0.7947
AT5G16970		AT-AER	alkenal reductase (.1)		Lus10040466 [exp]	3.9	0.7152
					Lus10003442 [exp]	11.4	0.6947
AT5G19640			Major facilitator superfamily ...		Lus10013736 [exp]	13.6	0.6757
AT5G44980			F-box/RNI-like/FBD-like domain...		Lus10008502 [exp]	13.9	0.6564
					Lus10019938 [exp]	17.9	0.6902
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036822 [exp]	37.5	0.6615

Compare expression of checked genes

Lus10026419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.