Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36920 257 / 2e-82 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) AT2G28550 245 / 1e-77 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) AT5G67180 238 / 3e-76 AP2_ERF TOE3 target of early activation tagged (EAT) 3 (.1) AT5G60120 167 / 2e-47 AP2_ERF TOE2 target of early activation tagged (EAT) 2 (.1), target of early activation tagged (EAT) 2 (.2) AT2G39250 127 / 6e-34 AP2_ERF SNZ SCHNARCHZAPFEN, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 129 / 9e-34 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G51190 130 / 1e-33 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 129 / 3e-33 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT4G37750 129 / 5e-33 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT3G54990 123 / 5e-33 AP2_ERF SMZ SCHLAFMUTZE, Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019905 [exp] 522 / 0 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10015055 [exp] 367 / 1e-124 AT2G28550 302 / 1e-97 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10023165 [exp] 343 / 2e-114 AT4G36920 302 / 2e-97 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10019331 [exp] 246 / 1e-77 AT4G36920 392 / 1e-133 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10009374 [exp] 244 / 5e-77 AT4G36920 394 / 2e-134 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10041595 [exp] 240 / 4e-76 AT4G36920 370 / 2e-125 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10018124 [exp] 238 / 1e-74 AT2G28550 342 / 4e-113 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10004990 [exp] 238 / 6e-74 AT4G36920 369 / 2e-123 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10036141 [exp] 219 / 5e-67 AT2G28550 330 / 4e-108 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G132400 [exp] 321 / 2e-106 AT2G28550 307 / 2e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.016G084500 [exp] 314 / 6e-104 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.008G045300 [exp] 266 / 3e-85 AT2G28550 292 / 1e-93 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.007G046200 [exp] 253 / 7e-80 AT4G36920 361 / 2e-120 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.005G140700 [exp] 249 / 2e-78 AT4G36920 355 / 1e-118 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.010G216200 [exp] 231 / 9e-72 AT2G28550 263 / 9e-83 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.003G185300 [exp] 128 / 8e-34 AT1G16060 291 / 5e-97 ARIA-interacting double AP2 domain protein (.1.2) Potri.017G078600 [exp] 128 / 1e-33 AT3G54320 289 / 2e-94 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.014G012200 [exp] 130 / 2e-33 AT4G37750 405 / 8e-134 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.003G205700 [exp] 129 / 2e-33 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10026477 pacid=23164302 polypeptide=Lus10026477 locus=Lus10026477.g ID=Lus10026477.BGIv1.0 annot-version=v1.0 ATGGCTGAGAAGATTGTTGCTCAGGTCCAGCAGCAGCAGCAGCAGCAGCAAAAGCCTCCGGTGAAGAAGAACCGGCGAGGTCCCCGGTCGAAGAGCTCCC AGTACCGCGGCGTCACGTTTTACCGGAGGACTGGCCGCTGGGAATCGCACATTTGGGATTGCGGTAAACAAGTATACCTTGGGGGATTCGACACAGCACA CTCTGCCGCGAGGGCTTATGATCGAGCTGCGATCAAGTTCCGTGGAATCGATGCTGATATCAATTTCAATGTCAGCGATTACGATGACGATATTAGTCAG ATGAGCAATTACACAAAGGAGGAATTTGTTCAGATTCTTCGTCGCCAGAGCAGTGGATTCTCAAGGGGAAGCTCCAAGTTCAGAGGAGTCACACTCCACA AATGTGGGAGATGGGAAGCTCGGATGGGCCAGTTTCTGGGCAAGAAGTACATATACCTTGGCCTTTATGATAGCGAGATAGAAGCTGCGAGGGCCTATGA CATGGCTGCCATCAAATGCAATGGAAGCGAGGCCGTCACCAACTTTGAGCCCAGCTCATATGATGAAGAGATCATATCCGATGCCAAGCCTGGAGATCAT AATCTTGATCTGAACTTGGGTATTGCTCCTCCTGAGGCACCTGAAGTTAAAAGGGTAAACAGCTTTTGCGATCCCTTTTGCATACAAAGGAACTCAAACT CGGCTTCAGCAACGATGAAGAACCCTCCTCAGCTATCTCATCTACCGCTCATGGGAACTGAGGTCCTTCCTACTGGACCTAGCGTAAACCCCGGTTTCTT TCCTATATCTAAGGAAAGAGCAATGGATAAGAGGGTAGGAGCGCACCCTAGTTTGCTAAACTGGGCATGGAAGCTACAAGGTCCATACGGTAGGGAAAAT CATCCACTGCCACTCTTCTCTAGTGCAGCATCATCAGGATTCTCGTCTTCGACAATTACAACTATACCTAACTCCGCTGTTGCAGCATCAGCAGCAGTAG GAGCTCCTCCTCAACTTTACTTCCATAACTCGGCCATCCAGCATTACTCTTAA
AA sequence Show only first row Show all	>Lus10026477 pacid=23164302 polypeptide=Lus10026477 locus=Lus10026477.g ID=Lus10026477.BGIv1.0 annot-version=v1.0 MAEKIVAQVQQQQQQQQKPPVKKNRRGPRSKSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGIDADINFNVSDYDDDISQ MSNYTKEEFVQILRRQSSGFSRGSSKFRGVTLHKCGRWEARMGQFLGKKYIYLGLYDSEIEAARAYDMAAIKCNGSEAVTNFEPSSYDEEIISDAKPGDH NLDLNLGIAPPEAPEVKRVNSFCDPFCIQRNSNSASATMKNPPQLSHLPLMGTEVLPTGPSVNPGFFPISKERAMDKRVGAHPSLLNWAWKLQGPYGREN HPLPLFSSAASSGFSSSTITTIPNSAVAASAAVGAPPQLYFHNSAIQHYS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10026477 [exp]	0	1
AT5G26230		MAKR1	membrane-associated kinase reg...		Lus10021928 [exp]	1.0	0.9528
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10019905 [exp]	1.7	0.9468
AT2G15000			unknown protein		Lus10013885 [exp]	3.2	0.9321
AT1G19880			Regulator of chromosome conden...		Lus10033168 [exp]	4.2	0.9499
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10033911 [exp]	4.5	0.9405
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	6.6	0.9456
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10023860 [exp]	11.2	0.9358
AT5G41760			Nucleotide-sugar transporter f...		Lus10037204 [exp]	11.2	0.9156
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10033796 [exp]	12.8	0.9320
AT5G49100			unknown protein		Lus10037496 [exp]	14.1	0.9006

Compare expression of checked genes

Lus10026477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.