Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03260 890 / 0 LAC11 laccase 11 (.1) AT2G38080 698 / 0 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G01190 652 / 0 LAC10 laccase 10 (.1) AT5G58910 635 / 0 LAC16 laccase 16 (.1) AT5G60020 634 / 0 LAC17, ATLAC17 laccase 17 (.1) AT2G29130 608 / 0 LAC2, ATLAC2 laccase 2 (.1) AT1G18140 589 / 0 LAC1, ATLAC1 laccase 1 (.1) AT5G05390 574 / 0 LAC12 laccase 12 (.1) AT2G40370 545 / 0 LAC5 laccase 5 (.1) AT2G30210 543 / 0 LAC3 laccase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023189 [exp] 973 / 0 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10002227 [exp] 966 / 0 AT5G03260 926 / 0.0 laccase 11 (.1) Lus10035517 [exp] 696 / 0 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10017175 [exp] 687 / 0 AT2G38080 875 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10027782 [exp] 687 / 0 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10032894 [exp] 678 / 0 AT2G38080 894 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10018208 [exp] 671 / 0 AT2G38080 837 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10040697 [exp] 670 / 0 AT2G38080 828 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10028263 [exp] 652 / 0 AT2G38080 775 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G156400 [exp] 894 / 0 AT5G03260 877 / 0.0 laccase 11 (.1) Potri.007G023300 [exp] 892 / 0 AT5G03260 889 / 0.0 laccase 11 (.1) Potri.009G102700 [exp] 879 / 0 AT5G03260 881 / 0.0 laccase 11 (.1) Potri.016G112000 [exp] 707 / 0 AT2G38080 911 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.016G112100 [exp] 698 / 0 AT2G38080 891 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G097000 [exp] 696 / 0 AT2G38080 914 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G097100 [exp] 695 / 0 AT2G38080 896 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.009G042500 [exp] 690 / 0 AT2G38080 891 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G096900 [exp] 689 / 0 AT2G38080 899 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.001G248700 [exp] 680 / 0 AT2G38080 874 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10026512 pacid=23164229 polypeptide=Lus10026512 locus=Lus10026512.g ID=Lus10026512.BGIv1.0 annot-version=v1.0 ATGGCAAAGATGCAGAGTTCTTGGCTCGGGTTACTAGTTTGTCTCCTCTTCTCCTCTATTGGGTTCCTCTGTTTTCCTGCTGAAGCTGCGGTTAAGAAGT ACCAATTTGATATCCAAGTGAAGAATGTAAGCAGGCTGTGCCACGCTAAGCCAATTGTGACGGTGAACGGGATGTTTCCAGGGCCAACTCTTTACGTCAG GGAAGGAGATGACGTTCTCATCAACGTCACCAACTCTGCACAATACAACATGTCGATCCATTGGCATGGGCTGAAACAGTTCAGAAATGGATGGGCTGAT GGGCCGGCTTACATAACGCAGTGCCCCATCAAGCCCGGAAACAGCTACACTTACAACTTCACCGTGACGGGTCAACGAGGCACACTTTGGTGGCATGCTC ATATCTTGTGGCTAAGAGCTACTGTCTATGGTGGCATCGTCATTATGCCTCCTCAAGGAACTCCCTTCCCCTTCCCTAAGCCCGACTTGGAAACCAATAT CGTTTTAGGTGAATGGTGGAACTCGGATGTCGAGAAACTTGTCGAGCAAGCTAACAAGTTGGGGTTGCCTCCGCCGTCGTCCGATGCTCATACCATCAAT GGGAAGCCGGGCCCTCTCTTCCCTTGTTCCGAAAAACATACTTTTGCAATGCAAGTAGAGTCGGGAAAGACATATCTTCTCAGGATCATCAACGCTGCAC TCAATGACGAGCTATTCTTTGCTGTAGCGGGCCATACCATGACAGTTGTGGAGATCGATGCGGTCTACACCAAGCCGTTCACGACTCGAGCCATACTAAT CGCTCCGGGGCAAACTACGAACGTTCTCGTCAGGGCAGACCAAATTCCTGACAGGTATTTCATGGCTGCCAAGCCTTTTATGGATGCGCCGGTTCCTGTA GACAACAAAACAGTGACTGCGATTCTTCAATACAAAGGAATCCCGACCACAATCCTTCCGAAGCTTCCTACATTACCGGCCTCCAATGACACGAAATTTG CCTTGGCTTACGCTGCCAAGCTTAGGAGTCTCAACACCGCCCAGTTCCCGGCTATCGTCCCTCTAAAGGTCGACCGGAAATTGTTCTACACGATCGGGTT GGGGAAAAATCCATGCCCAACCTGCCAGAATGACACGAAAATTTCTGCATCACTTAACAACATAACGTTTGTGATGCCAAAAACCGGTCTGCTCCAAGCA CATTACTTCAACATGTCAGGAGTTTTCAAAACCGATTTCCCTGATCGCCCCCCGAAGACTTTTAACTACACCGGAGTTCCTCTTACTGCAAATCTCGCAA CTTCCTTAGGCACAAGGCTCAGCAGGATCCCTTTCAATACAACAGTTGAATTGGTGCTTCAAGATACAAATCTATTGACGGTTGAATCTCACCCTTTCCA TCTCCATGGTTATAACTTCTTTGTTGTCGGGACAGGAATCGGTAATTTCGATGCTGCAAAGGATCCTGCTAAGTATAACCTGGTGGATCCTCCGGAACGA AACACGGTAGGAGTTCCAACCGGTGGATGGACCGCTATAAGGTTCAGAGCTGATAATCCTGGCGTCTGGTTCATGCACTGTCACTTAGAACTTCACACAA TGTGGGGGTTGAAGATGGCTTTTGTCGTCGAAGATGGAATCTCTCCCGGACAAAAGATTTTGCCACCGCCAAATGACCTCCCAAGTTGCTGA
AA sequence Show only first row Show all	>Lus10026512 pacid=23164229 polypeptide=Lus10026512 locus=Lus10026512.g ID=Lus10026512.BGIv1.0 annot-version=v1.0 MAKMQSSWLGLLVCLLFSSIGFLCFPAEAAVKKYQFDIQVKNVSRLCHAKPIVTVNGMFPGPTLYVREGDDVLINVTNSAQYNMSIHWHGLKQFRNGWAD GPAYITQCPIKPGNSYTYNFTVTGQRGTLWWHAHILWLRATVYGGIVIMPPQGTPFPFPKPDLETNIVLGEWWNSDVEKLVEQANKLGLPPPSSDAHTIN GKPGPLFPCSEKHTFAMQVESGKTYLLRIINAALNDELFFAVAGHTMTVVEIDAVYTKPFTTRAILIAPGQTTNVLVRADQIPDRYFMAAKPFMDAPVPV DNKTVTAILQYKGIPTTILPKLPTLPASNDTKFALAYAAKLRSLNTAQFPAIVPLKVDRKLFYTIGLGKNPCPTCQNDTKISASLNNITFVMPKTGLLQA HYFNMSGVFKTDFPDRPPKTFNYTGVPLTANLATSLGTRLSRIPFNTTVELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDAAKDPAKYNLVDPPER NTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVEDGISPGQKILPPPNDLPSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03260		LAC11	laccase 11 (.1)		Lus10026512 [exp]	0	1
AT4G18425			Protein of unknown function (D...		Lus10015394 [exp]	5.8	0.9233
AT1G73140		TBL31	Plant protein of unknown funct...		Lus10028141 [exp]	6.3	0.8882
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10025859 [exp]	9.0	0.9105
AT2G42005			Transmembrane amino acid trans...		Lus10026549 [exp]	13.4	0.9133
AT3G06100		NIP7;1, NLM8, N...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10041222 [exp]	21.2	0.7953
AT5G61750			RmlC-like cupins superfamily p...		Lus10042616 [exp]	21.4	0.9015
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10038240 [exp]	26.4	0.8852
AT1G10800			unknown protein		Lus10041270 [exp]	26.9	0.8989
AT4G25850		ORP4B	OSBP(oxysterol binding protein...		Lus10006969 [exp]	27.3	0.8960
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036460 [exp]	35.2	0.8928

Compare expression of checked genes

Lus10026512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.