Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03280 556 / 1e-174 CKR1, PIR2, ORE3, ORE2, ERA3, EIN2, ATEIN2 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) AT1G15960 116 / 2e-26 ATNRAMP6, NRAMP6 NRAMP metal ion transporter 6 (.1) AT1G80830 112 / 4e-25 ATNRAMP1, PMIT1, NRAMP1 natural resistance-associated macrophage protein 1 (.1) AT1G47240 105 / 3e-23 ATNRAMP2, NRAMP2 NRAMP metal ion transporter 2 (.1) AT2G23150 102 / 4e-22 ATNRAMP3, NRAMP3 natural resistance-associated macrophage protein 3 (.1) AT4G18790 100 / 1e-21 ATNRAMP5, NRAMP5 NRAMP metal ion transporter family protein (.1) AT5G67330 100 / 2e-21 ATNRAMP4 ARABIDOPSIS THALIANA NATURAL RESISTANCE ASSOCIATED MACROPHAGE PROTEIN 4, natural resistance associated macrophage protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013803 [exp] 2466 / 0 AT5G03280 627 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10013804 [exp] 1806 / 0 AT5G03280 1076 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10026517 [exp] 1756 / 0 AT5G03280 1057 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10024069 [exp] 111 / 6e-25 AT1G15960 822 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10041652 [exp] 111 / 8e-25 AT1G15960 826 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10010395 [exp] 104 / 1e-22 AT1G47240 759 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10014868 [exp] 104 / 1e-22 AT1G47240 763 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10018132 [exp] 100 / 2e-21 AT1G15960 623 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10004317 [exp] 100 / 2e-21 AT1G47240 793 / 0.0 NRAMP metal ion transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G127100 [exp] 1401 / 0 AT5G03280 1261 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Potri.016G090800 [exp] 1380 / 0 AT5G03280 1348 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Potri.002G080400 [exp] 116 / 1e-26 AT1G80830 546 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.001G044900 [exp] 115 / 2e-26 AT1G15960 744 / 0.0 NRAMP metal ion transporter 6 (.1) Potri.005G181000 [exp] 115 / 5e-26 AT1G80830 571 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.005G181100 [exp] 114 / 7e-26 AT1G80830 550 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.002G080500 [exp] 113 / 1e-25 AT1G80830 590 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.002G121000 [exp] 103 / 1e-22 AT1G47240 790 / 0.0 NRAMP metal ion transporter 2 (.1) Potri.007G050700 [exp] 101 / 6e-22 AT2G23150 768 / 0.0 natural resistance-associated macrophage protein 3 (.1) Potri.007G050600 [exp] 97 / 3e-20 AT2G23150 765 / 0.0 natural resistance-associated macrophage protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01566 [flax] [poplar] Nramp Natural resistance-associated macrophage protein
Representative CDS sequence Show only first row Show all	>Lus10026516 pacid=23164226 polypeptide=Lus10026516 locus=Lus10026516.g ID=Lus10026516.BGIv1.0 annot-version=v1.0 ATGGATACAGACACTGGAAATGTCCATATACCAGTTGTTCTCCGGAGGCTACTTCCTGCTGTTGGACCTGTGCTTTTGATTTCAGTAGCGTATGTCGACC CTGGGAAGTGGGCAGCCACTGTGGAAGGCGGTGCCCGTTTTGGAATTGATCTGGTCCTGCCAATGCTCATTTTTAATTTTGCAGCAATACTGTGCCAGTA CCTGTCCGCTAAAGTTGGTATTGTCACCGGTAGAGATCTTGCTCAGATTTGCAGTGAGGAGTATGACAAGGGAACATGCATGCTCTTGGGAATTCAAACA GCAGTTTCAGTGATGGCATTGGACCTCAGCATGGTACTTGGCACTGCACATGGGCTTAATCTTCTTCTGGGGCTGGACTTGCCCACCTGCATCTTTTTGA CTGCTGTGGATGCTGTATTATTTCCATTTTTCGGTGCCTTTCTGGAGAAACACAAGGGATATTACCCATCCATATGTGTGGCAGGCTCTTTGTTACTCTT CTATTTTCTTGGGGTGCTCATTAGTCAACCAGAGGTTCCTCTTTCATTGAATGGGATGCTGATGAAGTTAAGCGAGGAAAGTGCATTTGCTCTGATGAGT CTTCTTGGTGCAAGCATTATGCCTCACAATTTCTATATGCATTCTTCCATTGTTCTGCATCATCCGCGATCTCCCAATGTTTCTAAGAGTTCCTTGTGCT ATGACAGCTTTTTTGCCATTTTATGCATCTTTAGTGGCATATATTTGGTGAACTATGTGCTCATGAACTCGGCTGCGAATGTTTTCCACAGTACTGGCCT TGTTTTGGTTACTTTTCCAGATGCTTTGTCACTAATGGAGCAGGTGTTTCGCAGTCCAGTGGCACCCTTGTTCTTTGTAGTGATTTTGTACCTTTCGAAT CAAATCTCAGCATTAACTTGGAACCATGGCGGGCAAGTAGTTGTGCATGATTTCCTCCTACTTGACATACCTAACTGGCTCCAGCGAGCTACAACCAGGA TTGTTGCGATTGTTCCAGCCCTTTATTGTGTATGGACTTCTGGAGTTGAAGGAGCATACCAGTTGCTCATATTTTCTCAAGTTATGGTAGCCCTTCTACT ACCATCTTCTGTTTCTTCTGTCATTCCACTATTCCGGGTGGCATCATCAAGGGCCATAATGGGTGCCCATAAAATATCTCAAATCCTGGAGTTCTTGGCA GTTATCACATTCATGGGGATGCTAGGGTTGAAGATCATATTTGTGGTAGAAATGATTTTTGGGGATAGTGATTGGATCGGAAATTTGCAATGGAATATGG GCAGCAGTTCGTCTGTTCCTTCTGTTGTTCTTATTCTAACGGCTTTTACGTCATTCTGTTTGATGCTTTGGCTAGCAGCTACACCTTTGAAATCTGCGAC CGCCACCCATGCAGACCCTCAGACTTGGAACTGGGATGCAAAGCAAACTTTGCCAGAGCCATCCATGCGCAGAGATGAAACTTATTTAAGTGAGACTAGG TATGAAGGAGAAAGGCGTGCTGATCCAGTGAAGCCATTTGAGGGTTACACAGATAGAAGTATTGTACATGCTGATCCACATTTACCTGAAACTATTTTGG ATTCTCACAATTTGAGACCTGTAGCAGAACATCATTCTGATGTGAAATTTTTGAGTCCTCTGAGACCAAATCAGTCTGATATGAAGCTTCCTAGTCCTGT GGAACCAAATCAGTCTGATATGAAGCTTCCTAGTCCTCTGAGATTAAATCAATCTGATATGAAGCTTCCAAGTCCTCTGATACCAAATCAGTCTGATATG AAGCTTCCAAGTCCTCTGAGATCAAAGCAGTCTGATCTGAAGCTTCCGAGTCCCCCAAGACCAAATCAGTCTGATCTGAATCTTCCTAGACCTCTGGAAC CAAATCTGGAATCAGCACCTTCAGTAGAGCCAGTGTCAGTGCCAAAGGCAGAAAATTTAGCTGTTACTGAATTTGATTTACCGGACTCGAAGATGACGGT TGAATCACTTGAACCAATCGAAAAGACCGTGAGCATGGAAGGTGATTTGCTGCCAGAAAAGGAGCATGACAAGGGAGAATCATGGGAGCCTGAAGAGCCC TCCAAAGGAGTTCCTGCGAGTGTTTCGTCTTTCTCATCTGATGGTCCATCGTCATTCAGGAGTCTCAGTGGAAAAAGTGACGATGGTGGAAATGGTGCTG GAAGTCTTTCAAGACTGGCAGGGCTTGGTAGGGCTGCCAGACGTCAATTAGCTACAGTTCTTGATGAATTCTGGGGACAGTTGTATGATTTCCATGGTCA ACCAACGCAGGATGCCAAGAATAGAAGACTCGATCTGTTACTTATCGATCCAAAGCTTTCGTTTTCCTTCCTGAAAGTTGACCCTCCTTCAACTGAATAC AATGGGTATCCATCAAGAACAGACAGTAAAGGATCTGAATCTTTCATGGGTTCAAGTTTCTGTGATTCTCCCCGGCAGGTGACGCTGCAGAGTACTCTTG ACTCTCCATATAATGGGGGTCGAAGTGGACCTTCCTCGTTATTATCCAACCGCTCTCAGTTACTTGATAAATATTCTTTACCCAGCTCGAGCGTGGTGGA CCCTTTTGAGAGGCGGTATTCTAGTGTGCGAAATCTACCATCTACTGATGGTTGGGGAAATAGTCAGCCAATTACAAATATGATGGACCCTTCTGAAAGG CGTTACTCAAGTGTGCGAAATTTACCATCTTCTGATGGTTGGGGAAATGGCCAGCTAGCTACAAATGTGATGGACCCTTCTGAAAGGCGTTACTCAAGTG TGCGAAATCTACCATCTTCTGATGGTTGGGGGAATACTCAGCCAGCTACAATCCATGGTTATCAGATTGCTTCCATTGCTAACCGGATTGCCAAGGAGAG GAGTTCCAGTGGCCTGAATGGTGGAGTAGAGCCCATGTCGCCAACTTCTTCAGCCATGGGCATGCAGAGTTACAGGGATCCACAAGCAAGTGCTTTGGGC CAGAGGATACAGAGTGGATTGAGCTCCCCGGGATATCAGAATTTCGCAGTATCCAGAAATAGCTCATTACAGTCTGAAGCACAATACTACGATCTTGATT CGGCTTCTGCTGCTAACGATGGAGGACAGACAACCAATACAAAGAAGTACCACAGTTTGCCTGACATTTCAGGAATTGCTGGGCCTTACAGAGAGCTATA TCTATCCAGAAAACCTACTCAGCGCGACAATTCTGGTGGTTTTGCTTCCTCCTTAGGGAGAACGAGTTACGAGTCTTCTTTGTATCCAAATACTGGATCA GGAAATGCAAGTTCTTTGGGTTTTAATGACATTGGCACAAGTTATGGAGATGCTTTCTCATTTCCTACAACAGTTGCTGCTACTACTAGTACAGCTGGCG CAGGATCTCTTTGGTCCAGACAGCCCTTTGAGCAGTTTGGTGTTGGGGATAAAAACTGTGCAGTTGGAAGTTCTGTAGGAAGTAGTAGGTCTAATCCGAT TTCTCGTGAAGCTAGTTCCATAGTGGATGGAGAGGCGAAACTTCTTCGGTCCTTCAGATGCTGCATTGTCAAGCTACTGAAACTGGAAGGCTCGGATTGG TTGTTCAGGCAGAATGATGGAGCTGATGAGGACTTGATTGATCGTGTGGCCGCACGTGAGAAGTGCTTATATGAAGCTGAGGCGAGAGAGATGGGCGGCC AGGGGGTTCACTTGGGTGAGTCTCAATCCAGCAGCGATAAGAAGCAGAAGAATGACGAGGCCAGCATTGCTAGTATCTTGGTTTCGTCAATTCCTCACTG CGGAGAAGGCTGTGTTTGGAAGGCGGATTTGATTGTCAGCTTTGGAGTTTGGTGCATTCACAGGATTCTCGATTTGTCGCTAATGGAAAGCCGGCCTGAG CTATGGGGGAAGTATACCTATGTACTCAATCGCCTTCAGGGGATTGTGGAGCCGGCATTCTTGAGACCAAGGACTCCAATGCAGCCATGCTTCTGCCTGC AACTCTCTGCAGCGCACCAGCAGAGGTTGTTGTCCCAGCCACCATCGAATGGTATGCTACCGCCCACTGTGAAACCAGGGAGAGGGAAATGCACAACTGG TGCAATGGTCCTGGAGATGATAAAGGATGTAGAGATAGCGATTTCATGCAGGAAAGGCCGGTCAGGGACTGCTGCCGGGGATGTAGCTTTCCCAAAGGGA AAAGAGAACCTGGCGTCCGTCCTGAAACGGTACAAGCGGCGGCTTTCAAACAAGAAATGA
AA sequence Show only first row Show all	>Lus10026516 pacid=23164226 polypeptide=Lus10026516 locus=Lus10026516.g ID=Lus10026516.BGIv1.0 annot-version=v1.0 MDTDTGNVHIPVVLRRLLPAVGPVLLISVAYVDPGKWAATVEGGARFGIDLVLPMLIFNFAAILCQYLSAKVGIVTGRDLAQICSEEYDKGTCMLLGIQT AVSVMALDLSMVLGTAHGLNLLLGLDLPTCIFLTAVDAVLFPFFGAFLEKHKGYYPSICVAGSLLLFYFLGVLISQPEVPLSLNGMLMKLSEESAFALMS LLGASIMPHNFYMHSSIVLHHPRSPNVSKSSLCYDSFFAILCIFSGIYLVNYVLMNSAANVFHSTGLVLVTFPDALSLMEQVFRSPVAPLFFVVILYLSN QISALTWNHGGQVVVHDFLLLDIPNWLQRATTRIVAIVPALYCVWTSGVEGAYQLLIFSQVMVALLLPSSVSSVIPLFRVASSRAIMGAHKISQILEFLA VITFMGMLGLKIIFVVEMIFGDSDWIGNLQWNMGSSSSVPSVVLILTAFTSFCLMLWLAATPLKSATATHADPQTWNWDAKQTLPEPSMRRDETYLSETR YEGERRADPVKPFEGYTDRSIVHADPHLPETILDSHNLRPVAEHHSDVKFLSPLRPNQSDMKLPSPVEPNQSDMKLPSPLRLNQSDMKLPSPLIPNQSDM KLPSPLRSKQSDLKLPSPPRPNQSDLNLPRPLEPNLESAPSVEPVSVPKAENLAVTEFDLPDSKMTVESLEPIEKTVSMEGDLLPEKEHDKGESWEPEEP SKGVPASVSSFSSDGPSSFRSLSGKSDDGGNGAGSLSRLAGLGRAARRQLATVLDEFWGQLYDFHGQPTQDAKNRRLDLLLIDPKLSFSFLKVDPPSTEY NGYPSRTDSKGSESFMGSSFCDSPRQVTLQSTLDSPYNGGRSGPSSLLSNRSQLLDKYSLPSSSVVDPFERRYSSVRNLPSTDGWGNSQPITNMMDPSER RYSSVRNLPSSDGWGNGQLATNVMDPSERRYSSVRNLPSSDGWGNTQPATIHGYQIASIANRIAKERSSSGLNGGVEPMSPTSSAMGMQSYRDPQASALG QRIQSGLSSPGYQNFAVSRNSSLQSEAQYYDLDSASAANDGGQTTNTKKYHSLPDISGIAGPYRELYLSRKPTQRDNSGGFASSLGRTSYESSLYPNTGS GNASSLGFNDIGTSYGDAFSFPTTVAATTSTAGAGSLWSRQPFEQFGVGDKNCAVGSSVGSSRSNPISREASSIVDGEAKLLRSFRCCIVKLLKLEGSDW LFRQNDGADEDLIDRVAAREKCLYEAEAREMGGQGVHLGESQSSSDKKQKNDEASIASILVSSIPHCGEGCVWKADLIVSFGVWCIHRILDLSLMESRPE LWGKYTYVLNRLQGIVEPAFLRPRTPMQPCFCLQLSAAHQQRLLSQPPSNGMLPPTVKPGRGKCTTGAMVLEMIKDVEIAISCRKGRSGTAAGDVAFPKG KENLASVLKRYKRRLSNKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10026516 [exp]	0	1
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10013803 [exp]	1.0	0.9699
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10005101 [exp]	2.0	0.8588
AT1G10050			glycosyl hydrolase family 10 p...		Lus10011465 [exp]	16.9	0.8262
AT1G06900			Insulinase (Peptidase family M...		Lus10042213 [exp]	17.1	0.8267
AT5G28850			Calcium-binding EF-hand family...		Lus10032772 [exp]	18.0	0.8537
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10038564 [exp]	18.7	0.8483
AT1G77680			Ribonuclease II/R family prote...		Lus10025614 [exp]	18.8	0.8030
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10038008 [exp]	19.1	0.8641
AT3G44330			unknown protein		Lus10013307 [exp]	19.6	0.8512
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10041971 [exp]	23.2	0.8650

Compare expression of checked genes

Lus10026516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.