Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03280 1009 / 0 CKR1, PIR2, ORE3, ORE2, ERA3, EIN2, ATEIN2 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) AT1G15960 143 / 1e-35 ATNRAMP6, NRAMP6 NRAMP metal ion transporter 6 (.1) AT1G80830 135 / 7e-33 ATNRAMP1, PMIT1, NRAMP1 natural resistance-associated macrophage protein 1 (.1) AT4G18790 117 / 5e-27 ATNRAMP5, NRAMP5 NRAMP metal ion transporter family protein (.1) AT1G47240 115 / 2e-26 ATNRAMP2, NRAMP2 NRAMP metal ion transporter 2 (.1) AT5G67330 114 / 3e-26 ATNRAMP4 ARABIDOPSIS THALIANA NATURAL RESISTANCE ASSOCIATED MACROPHAGE PROTEIN 4, natural resistance associated macrophage protein 4 (.1) AT2G23150 114 / 6e-26 ATNRAMP3, NRAMP3 natural resistance-associated macrophage protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013804 [exp] 2209 / 0 AT5G03280 1076 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10026516 [exp] 1768 / 0 AT5G03280 628 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10013803 [exp] 956 / 0 AT5G03280 627 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10041652 [exp] 133 / 5e-32 AT1G15960 826 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10024069 [exp] 133 / 5e-32 AT1G15960 822 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10018132 [exp] 123 / 1e-28 AT1G15960 623 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10010395 [exp] 120 / 7e-28 AT1G47240 759 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10028542 [exp] 120 / 1e-27 AT1G15960 624 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10014868 [exp] 119 / 1e-27 AT1G47240 763 / 0.0 NRAMP metal ion transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G127100 [exp] 821 / 0 AT5G03280 1261 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Potri.016G090800 [exp] 818 / 0 AT5G03280 1348 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Potri.002G080400 [exp] 137 / 2e-33 AT1G80830 546 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.005G181000 [exp] 135 / 1e-32 AT1G80830 571 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.002G080500 [exp] 134 / 3e-32 AT1G80830 590 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.005G181100 [exp] 133 / 3e-32 AT1G80830 550 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.001G044900 [exp] 133 / 4e-32 AT1G15960 744 / 0.0 NRAMP metal ion transporter 6 (.1) Potri.002G121000 [exp] 115 / 3e-26 AT1G47240 790 / 0.0 NRAMP metal ion transporter 2 (.1) Potri.007G050700 [exp] 112 / 1e-25 AT2G23150 768 / 0.0 natural resistance-associated macrophage protein 3 (.1) Potri.007G050600 [exp] 110 / 5e-25 AT2G23150 765 / 0.0 natural resistance-associated macrophage protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01566 [flax] [poplar] Nramp Natural resistance-associated macrophage protein
Representative CDS sequence Show only first row Show all	>Lus10026517 pacid=23164320 polypeptide=Lus10026517 locus=Lus10026517.g ID=Lus10026517.BGIv1.0 annot-version=v1.0 ATGAATTCAGAATCTGGAAATGCTAACCATGTGTTGGGTGTTCTTGGGAGGCTTCTTCCAGCTGTTGGACCCACGCTATTGATTTCAGTAGCATATGTTG ACCCTGGGAAGTGGGCAGCCACTGTGGAAGGTGGTGCCCGTTTTGGATTCGATCTGGTCCTGCCGATGCTCATTTTTAATTTGGCAGCGATATTGTGCCA GTATCTGTCCGCTAAAGTTGGTATTGTCACTGGTAGAGATCTTGCTCAGATTTGCATTGAGGAGTATGACAAGGGAACATGCATGCTCTTGGGAATTCAA GCAGCAGTTTCAGTGATGGCATTGGACCTCAGCATGGTACTTGGCATTGCACATGGGCTTAATCTTCTTCTGGGGCTGGACTTGCCCACCTGTATCTTTT TGACTGCTGTGGATGCTGTATTATTTCCATTTTTCGGTGCCTTTCTGGACAAACACAAGGGATATTACCCATCCATATGTGTGGCAAGCTCCTTGTTACT CTTCTATTTTTTGGGGGTGCTCATTAGTCAACCAGAGGCTCCCCTTTCATTGAATGGAATGCTGATGAAGTTAAGCGAGGAAAGTGCATTTGCTCTGATG AGTCTTCTTGGAGCAAGCATTATGCCTCACAATTTCTATATGCATTCTTCCATTGTTCTGCATCATCCACGATCCCCCAATGTTTCTAAGAGCACCTTAT GCTATGAAAACTTCATTGCCATTTTATGCATTTTTAGTGGCATATATATGGTGAACTATGTGCTCATGAACTCAGCTGCCAATGTGTTCCACAGTACTGG CCTTGTTTTGGTTACATTTCCGGATGCATTGTCACTCATGGAGCAGGTGTTTCGCAATCCAGTGGCACCCTTGTTCTTTGTAGCGATTTTGCATCTTTCT AGTCAAATTTCAGCATTAACTTGGAGCAACGACGGGCAAGTAGTTGTGCATGATTTCCTCCTACTTGACGTACCTAACTGGCTCCAGCGAGCTACAACCA GAATTGTTGCCATTGTTCCAGCACTTTGTTGTGTATGGACTTCTGGAGTTGAAGGAGCATACCAGTTGCTCATATTTTCTCAAGTTATGGTAGCCCTTCT GCTACCATCTTCTGTCATTCCACTATTCCGTGTGGCATCATCGAAGGCCATAATGGGCGGCCATAAAATATCTCAAGTCCTGGAGTTCTTGGCAGTTATA GCATTCTCGGGGATGCTGGGATTGAAGATGATGTTTGTGGTAGAAATGATTTTCGGGGATAGTGATTGGATCGGCGATTTGCAGTGGAATATGGGCAGAA GTTCATCACTCCCTTATATTGTTCTTATTCTAACGGCTTTTACATTATTCTGCTTCATGCTTTGGCTAGCAACTTCACCGTTGAAATCTGCGACCCATAA AGACGCTCCGGCATGGAACTGGGATGCAAAGCAAATGTTGTCCGAGCCATCTGTACGTAGAGATGAAGAAAGGTATGTTCATAAGCAAGAAGCGGTACCA ATCCCCGTGAAGCCCTTTGAGGATAGAACTGTTATAAATGCTGATCCACATTTACCTGAAACTGGTTTGGATTCTCGCACGGATCTTCATTCGAGAACTG TAGTAGAAAATCAGCCTGATGTGAAAAATCTGAGTCCTCTGAGACCATATCAGTGTGATATGAAGCTTCCTAGTCTTGTGGAACCAAATCTGGATTCGGC ACCTTCAGTAGAGCCGATGTCAGTGTCAAAGGCAGCAAATTTAGCTGTTGCTGAACTTGAATTACTTGAACCTATTGAAAAGACTGTGAGCATGGAAGGT GATCCTTGTGAGCCAGAAAAGGAGCAAGACAAGGGAGTTACCTGGGAGCCTGAAGAGCCATCCACAGGGGTTCCTGGGAGTGTTCCATCTTTGAAATCTG ATGGTCCATCATCATTTAGGAGTCTCAGCGGAAAAAGTGACGATGGTGGAAATGGTGCTGGAAGTCTTTCAAGATTGGCAGGGTTGGGTAGGGCTGCCAG ACGTCAATTAGCTACAGTTCTTGATGAATTCTGGGGCCAGTTGTATAATTTCCATGGTCAAGCAACGCAAGATGCCAAGAATCGAAGGCTCGATCTGTTA CTTATTGATTCAAAGCTTTCATTTTCCTGCCTGAAAGTTGACCCTCCTACAATGGAAGGATCTGGATCTTTCAGGAGTTCAAGTTCATGTGATTCTCCTC GTGATTATGGTGGTCGGGGAGGATCTTACTCGTTATTATCCAACCGCTCTCACTTACTAGATTCACTATCTGTAGCCGGCTCGAGTATGGTGGACCCTTC TGAAAGGCGGTATTCTAGTCTGCGAACTTTATGGTCAGCTGATGGTTGGGGGAGTACTCAATCAGCTACAGTACCTGTGATGGACCCTTCTGAAAGGCGG TATTCTAGTGTGCGAAATCTACCATCGTCTGGTGGTTGGGGATATGGTCAGCTAGCTACGAATGTGATGGACCCTTCTGAAAGGCGCTACTCAAGTGTAC GAAATTTACCATCTTCTGATGGTTGGCAGAATACCCAGGCAGCTAGAAATATGATAGACCCTTCTGAAAGGCGTTATTCTAGTTTGCGAACACTACCATC TTCTGATTATCAGATTGCTTCCATTGCTAACCGGATTGCCAAGGAGAGGAGTTCCAGTGGCTTGAATGGTGGAATGGAATCTATGTCGCCAAGCTCTTCA GCCATGGGCATGCAGAGTTACAGGGATCCACTGGCAAGTCCTTTGGGGCAGAGATTACAGAGCGGATTAAGCTCTCCACGAGCAACAGGATATCAGAATT TCGCAGTATCCAGAAATAGCTCATTACAGTCTGAAACACAGTACTATTATGCAAGACAGACGACTGCTTCAAAGCAGTACCACAGTTTACCTGACATTTC AGGAATTGCTGGGCCTTACAGAGAGATGTTTCTATCCAGAAACCCTACTCAGCTGGACGGTTCTGGTGGTTTTAATTCCTCCTTAGGCAGAATGAGTTAC GAGAACTCCTCTTTGTATCCAAATACCGGAATAGGAAATGCAAGTTCTTTGGGTGTTGACAACATGTCCAGAAGATATGGAGGTGTTTTCCCATTTCCTA CAACCACTACTAGTACTACTGCCACAGGCACAGGATCTCTTTGGTCCTCGTCTAGTCCGATTGCTTGTGAAGCTAGTTCCATTGTGGATGCAGAAGCAAA ACTTCTTCGGTCCTTCAGATCCTGCATTGTCAAGCTACTGAAACTGGAAGGCTCGGATTGGTTGTTTAGACAGAACGATGGAGCTGACGAGGACTTGATT GATCGTGTGGCTGCACGTGAGAGGTGCTTATACGAAGCTGAGGCGAGAGAGATGGCCCCGAAGAACGACGAGAAGCACAGTTCCTCCCTGAAGAACGATG AGGCCAGCATCACCAATATCTTGGTTTCGTCAATTCCTCACTGCGGAGATGGCTGTGTTTGGAAGGCGGATCTGATAGTGAGCTTTGGAGTTTGGTGCAT TCACAGGATTCTCGATTTGTCGCTAATGGAAAGCCGGCCCGAGCTATGGGGGAAGTATACCTATGTACTCAATCGCCTTCAGGGGATCGTGGAGCCGGCA TTCCTGAGACCAAGGACTCCAATGCAGCCATGCTTCTGCCTGCAACTCTCTGCAGCGCATCAGCAGAGGTTGTTGTCCCAACCACCATCAAACAACGGTA TGCTACCGCCCACTGCGAAACCAGGGAAAGGGACATGCACAACTGGGGCAATGGTCCTGGAGATGATCAAGGATGTCGAGATAGCGATTTCGTGCAGGAA AGGCCGGTCGGGGACTGCTGCCGGGGATGTTGCATTCCCAAAGGGAAAAGAGAACCTGGCATCGGTCTTGAAACGGTACAAGCGACGACTTTTACAAGCG ACGCCTTTCGAACATGCCGGTGGGGAAGTGAAGTGA
AA sequence Show only first row Show all	>Lus10026517 pacid=23164320 polypeptide=Lus10026517 locus=Lus10026517.g ID=Lus10026517.BGIv1.0 annot-version=v1.0 MNSESGNANHVLGVLGRLLPAVGPTLLISVAYVDPGKWAATVEGGARFGFDLVLPMLIFNLAAILCQYLSAKVGIVTGRDLAQICIEEYDKGTCMLLGIQ AAVSVMALDLSMVLGIAHGLNLLLGLDLPTCIFLTAVDAVLFPFFGAFLDKHKGYYPSICVASSLLLFYFLGVLISQPEAPLSLNGMLMKLSEESAFALM SLLGASIMPHNFYMHSSIVLHHPRSPNVSKSTLCYENFIAILCIFSGIYMVNYVLMNSAANVFHSTGLVLVTFPDALSLMEQVFRNPVAPLFFVAILHLS SQISALTWSNDGQVVVHDFLLLDVPNWLQRATTRIVAIVPALCCVWTSGVEGAYQLLIFSQVMVALLLPSSVIPLFRVASSKAIMGGHKISQVLEFLAVI AFSGMLGLKMMFVVEMIFGDSDWIGDLQWNMGRSSSLPYIVLILTAFTLFCFMLWLATSPLKSATHKDAPAWNWDAKQMLSEPSVRRDEERYVHKQEAVP IPVKPFEDRTVINADPHLPETGLDSRTDLHSRTVVENQPDVKNLSPLRPYQCDMKLPSLVEPNLDSAPSVEPMSVSKAANLAVAELELLEPIEKTVSMEG DPCEPEKEQDKGVTWEPEEPSTGVPGSVPSLKSDGPSSFRSLSGKSDDGGNGAGSLSRLAGLGRAARRQLATVLDEFWGQLYNFHGQATQDAKNRRLDLL LIDSKLSFSCLKVDPPTMEGSGSFRSSSSCDSPRDYGGRGGSYSLLSNRSHLLDSLSVAGSSMVDPSERRYSSLRTLWSADGWGSTQSATVPVMDPSERR YSSVRNLPSSGGWGYGQLATNVMDPSERRYSSVRNLPSSDGWQNTQAARNMIDPSERRYSSLRTLPSSDYQIASIANRIAKERSSSGLNGGMESMSPSSS AMGMQSYRDPLASPLGQRLQSGLSSPRATGYQNFAVSRNSSLQSETQYYYARQTTASKQYHSLPDISGIAGPYREMFLSRNPTQLDGSGGFNSSLGRMSY ENSSLYPNTGIGNASSLGVDNMSRRYGGVFPFPTTTTSTTATGTGSLWSSSSPIACEASSIVDAEAKLLRSFRSCIVKLLKLEGSDWLFRQNDGADEDLI DRVAARERCLYEAEAREMAPKNDEKHSSSLKNDEASITNILVSSIPHCGDGCVWKADLIVSFGVWCIHRILDLSLMESRPELWGKYTYVLNRLQGIVEPA FLRPRTPMQPCFCLQLSAAHQQRLLSQPPSNNGMLPPTAKPGKGTCTTGAMVLEMIKDVEIAISCRKGRSGTAAGDVAFPKGKENLASVLKRYKRRLLQA TPFEHAGGEVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10026517 [exp]	0	1
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Lus10031442 [exp]	5.5	0.6127
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10015523 [exp]	10.2	0.6070
AT1G46912			F-box associated ubiquitinatio...		Lus10003349 [exp]	11.7	0.6375
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10019908 [exp]	14.9	0.6881
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10008276 [exp]	40.5	0.6127
AT2G47760		AtALG3, ALG3	Arabidopsis thaliana asparagin...		Lus10035085 [exp]	49.1	0.5456
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10025239 [exp]	50.1	0.5995
AT5G23490			unknown protein		Lus10004286 [exp]	56.1	0.5982
AT1G63430			Leucine-rich repeat protein ki...		Lus10008486 [exp]	56.6	0.5962
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034701 [exp]	62.8	0.5580

Compare expression of checked genes

Lus10026517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.