Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37025 97 / 1e-21 TRFL8 TRF-like 8 (.1.2) AT1G72650 88 / 3e-18 MYB TRFL6 TRF-like 6 (.1.2) AT1G17460 83 / 1e-16 MYB TRFL3 TRF-like 3 (.1.2) AT1G07540 59 / 6e-09 MYB TRFL2 TRF-like 2 (.1) AT3G46590 57 / 2e-08 ATTRP2, TRFL1 TRF-like 1 (.1.2.3) AT5G59430 57 / 2e-08 ATTRP1 TELOMERE REPEAT BINDING PROTEIN 1, telomeric repeat binding protein 1 (.1.2.3.4) AT3G53790 56 / 2e-08 MYB TRFL4 TRF-like 4 (.1) AT5G13820 55 / 1e-07 HPPBF-1, ATTBP1, ATBP-1, ATBP1, TBP1 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) AT3G12560 54 / 2e-07 ATTBP2, TRFL9 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) AT1G15720 48 / 8e-06 MYB TRFL5 TRF-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013810 [exp] 406 / 1e-141 ND / Lus10013809 [exp] 290 / 9e-98 AT2G37025 97 / 3e-24 TRF-like 8 (.1.2) Lus10015664 [exp] 86 / 1e-17 AT1G72650 335 / 9e-107 TRF-like 6 (.1.2) Lus10037678 [exp] 84 / 5e-17 AT1G72650 341 / 2e-109 TRF-like 6 (.1.2) Lus10002704 [exp] 57 / 2e-08 AT5G13820 471 / 4e-158 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10010844 [exp] 57 / 2e-08 AT1G07540 308 / 7e-97 TRF-like 2 (.1) Lus10000947 [exp] 57 / 2e-08 AT5G13820 455 / 5e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10024385 [exp] 57 / 3e-08 AT1G07540 310 / 7e-97 TRF-like 2 (.1) Lus10040285 [exp] 55 / 9e-08 AT5G13820 456 / 1e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G126300 [exp] 108 / 5e-25 AT2G37025 120 / 2e-29 TRF-like 8 (.1.2) Potri.001G170200 [exp] 88 / 3e-18 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2) Potri.003G063700 [exp] 84 / 3e-17 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2) Potri.006G086500 [exp] 61 / 2e-09 AT1G07540 370 / 2e-119 TRF-like 2 (.1) Potri.001G241600 [exp] 59 / 4e-09 AT1G07540 375 / 6e-121 TRF-like 2 (.1) Potri.009G032000 [exp] 57 / 2e-08 AT1G07540 485 / 7e-164 TRF-like 2 (.1) Potri.008G057300 [exp] 57 / 2e-08 AT5G13820 427 / 8e-141 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Potri.010G202400 [exp] 56 / 3e-08 AT3G12560 461 / 1e-154 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) Potri.006G147400 [exp] 47 / 2e-05 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1) Potri.018G066300 [exp] 44 / 0.0001 AT1G72740 186 / 6e-58 Homeodomain-like/winged-helix DNA-binding family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10026522 pacid=23164409 polypeptide=Lus10026522 locus=Lus10026522.g ID=Lus10026522.BGIv1.0 annot-version=v1.0 ATGGCACACTTCGATCCATTTGGAGCTATGACATCTTCGCAGGTAAAGGTAGATGATTTCTTACTTCCTGGATCACGAAGGGAAGCACATCAAGTTCAGC CCTGGCTCGCATTGGCAGAACAACCTACAGTACAGACTGTTTCGACTGATGGCTTGTCATGGTTTCGTAACGACACTTCTTGGAACAACTCGGGAGTTGG GGAATTCCTGCGGGCTTTAGAGTATAACCCAATAGGTGGGTTGGCTCACTATAGCACTGGAGGCCAAGATGCCTCAGAGCTTGGAGTTCTTGATGGTCTG CTTGGGGGCATGCCCGAAACAGGTCATTTTCTTGCAGCAAGCGAGATATCTAGAGAATACGAAGGTTTCCTTTTGAATCAAGGTTGTGATATTGCTGCGG CTGACAAGGTCTTCTTCGAAGCGAATCATGTTATGTCTGAGGGATTAGTACCGAGGAACTCAAGTTCAGAGAGTCAATCTCCTGCACTTGGCATTAGCAA CAATGTTGCTTATATAGGGACAGCAGAATCAACTACAGCAGCAGCAGGTGTTCTGGAAGCTCAATTCAAGACTATTGGTTCAGTTAGCAAGACAAGGATT TGTCCACCAGAGATGCATGGAACAAGATTAGATTCTGAAGCCAGTTATGACATTTACGGTAATAATCTGGAATGTCGTGATCAAGAGAATCATGATCAGA TTGATACGGAGCCTTCAGCACCTGGGTGGAAATGGAAGAGTGCTGGTAGGCGTTCCAAGAGAGTGGTTAAAAAATGTTCCGGTGCAAAGTTATCCTATCA AGAAAGATCCAAGGATGCTGAAGAAGAGTTTTTTACTGGAGCTGTTCTTCAAACACCAAACGAATCTTTGTCACGAAGAGTAACTCGAAAGAGGCAGCCT GTGTTTACGGTACGAGAAGCTTTTAGTCCTCCCAGGGTCTTGTATGTCTTACAAGCTACTAATGTCCTGATGGCTTTTTCTTACTCTCCTTGCTTACTCT CCTTGCTTACTCTCCAGGATCTGAAACCAGACGACCTATATACTTCATCGGAGTCTGAAGATGGCCGTAAGAACAAGACATTGGGATGTAAGAACAGAAG GAAGCATCACGTCATGTGGACTACTGCTGAGGTGTCTAAACTGATTGAAGGTGTGGCACAGTACGGAATCGGGAGATGGACTGACATCAAGAAGTTTCAT TTCCCGTCTTCTACTCATCGCACGCCTATTGATATCAGGGACAAATGGCGAAACCTTGTGAAATCCAGCCGGAACCAGAAACGATGGAATCAAGGGGTTG ATCAGAGGCAGCCGTCCCGGCTTGTGTTGTCGCAAGCTCAGATGGGACGTGTCATGGAACTGGCGACTATTCACATGAGGAACAATAAGAAGGGATGTTG A
AA sequence Show only first row Show all	>Lus10026522 pacid=23164409 polypeptide=Lus10026522 locus=Lus10026522.g ID=Lus10026522.BGIv1.0 annot-version=v1.0 MAHFDPFGAMTSSQVKVDDFLLPGSRREAHQVQPWLALAEQPTVQTVSTDGLSWFRNDTSWNNSGVGEFLRALEYNPIGGLAHYSTGGQDASELGVLDGL LGGMPETGHFLAASEISREYEGFLLNQGCDIAAADKVFFEANHVMSEGLVPRNSSSESQSPALGISNNVAYIGTAESTTAAAGVLEAQFKTIGSVSKTRI CPPEMHGTRLDSEASYDIYGNNLECRDQENHDQIDTEPSAPGWKWKSAGRRSKRVVKKCSGAKLSYQERSKDAEEEFFTGAVLQTPNESLSRRVTRKRQP VFTVREAFSPPRVLYVLQATNVLMAFSYSPCLLSLLTLQDLKPDDLYTSSESEDGRKNKTLGCKNRRKHHVMWTTAEVSKLIEGVAQYGIGRWTDIKKFH FPSSTHRTPIDIRDKWRNLVKSSRNQKRWNQGVDQRQPSRLVLSQAQMGRVMELATIHMRNNKKGC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37025		TRFL8	TRF-like 8 (.1.2)		Lus10026522 [exp]	0	1
AT5G40530			S-adenosyl-L-methionine-depend...		Lus10022276 [exp]	1.7	0.8675
					Lus10013810 [exp]	5.3	0.8488
AT2G34930			disease resistance family prot...		Lus10016339 [exp]	7.9	0.7602
AT3G57000			nucleolar essential protein-re...		Lus10032053 [exp]	10.2	0.8367
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Lus10007555 [exp]	10.4	0.8341
AT1G13570			F-box/RNI-like superfamily pro...		Lus10029077 [exp]	13.4	0.7834
AT3G61790			Protein with RING/U-box and TR...		Lus10002761 [exp]	14.4	0.7913
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10039948 [exp]	14.7	0.8134
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Lus10013733 [exp]	14.9	0.8167
AT1G72640			NAD(P)-binding Rossmann-fold s...		Lus10000373 [exp]	15.0	0.8285

Compare expression of checked genes

Lus10026522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.