Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57620 215 / 1e-67 MYB ATMYB36 myb domain protein 36 (.1) AT5G65790 216 / 2e-67 MYB AtMYB68 myb domain protein 68 (.1) AT3G49690 214 / 2e-67 MYB ATMYB84, RAX3 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) AT2G36890 212 / 1e-66 MYB BIT1, ATMYB38, RAX2 REGULATOR OF AXILLARY MERISTEMS 2, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, Duplicated homeodomain-like superfamily protein (.1) AT5G23000 207 / 2e-64 MYB ATMYB37, RAX1 REGULATOR OF AXILLARY MERISTEMS 1, myb domain protein 37 (.1) AT4G37780 203 / 3e-63 MYB ATMYB87 myb domain protein 87 (.1) AT5G56110 165 / 2e-48 MYB MS188, ATMYB80, AtMYB103 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) AT4G09460 161 / 8e-48 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT3G61250 161 / 4e-47 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT4G05100 160 / 2e-46 MYB ATMYB74 myb domain protein 74 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013830 [exp] 513 / 0 AT5G57620 236 / 1e-75 myb domain protein 36 (.1) Lus10023002 [exp] 259 / 3e-85 AT2G36890 236 / 4e-77 REGULATOR OF AXILLARY MERISTEMS 2, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, Duplicated homeodomain-like superfamily protein (.1) Lus10001394 [exp] 250 / 1e-81 AT5G57620 236 / 2e-76 myb domain protein 36 (.1) Lus10021428 [exp] 231 / 8e-74 AT5G57620 248 / 2e-80 myb domain protein 36 (.1) Lus10016139 [exp] 230 / 3e-73 AT5G57620 236 / 6e-76 myb domain protein 36 (.1) Lus10011606 [exp] 216 / 2e-67 AT5G57620 245 / 3e-79 myb domain protein 36 (.1) Lus10007248 [exp] 216 / 3e-67 AT5G57620 259 / 3e-84 myb domain protein 36 (.1) Lus10028248 [exp] 215 / 3e-67 AT5G65790 253 / 2e-82 myb domain protein 68 (.1) Lus10039646 [exp] 215 / 5e-67 AT5G57620 244 / 6e-79 myb domain protein 36 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G099200 [exp] 249 / 1e-80 AT5G57620 234 / 3e-75 myb domain protein 36 (.1) Potri.006G123400 [exp] 247 / 5e-80 AT5G57620 233 / 9e-75 myb domain protein 36 (.1) Potri.009G007100 [exp] 229 / 6e-73 AT5G57620 239 / 5e-77 myb domain protein 36 (.1) Potri.004G215100 [exp] 226 / 7e-72 AT5G57620 240 / 2e-77 myb domain protein 36 (.1) Potri.002G113700 [exp] 216 / 6e-68 AT3G49690 239 / 5e-77 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.007G007900 [exp] 214 / 6e-67 AT3G49690 253 / 1e-82 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.006G234200 [exp] 213 / 6e-67 AT3G49690 232 / 7e-75 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.018G095900 [exp] 214 / 7e-67 AT5G57620 275 / 2e-90 myb domain protein 36 (.1) Potri.006G170800 [exp] 210 / 4e-65 AT5G57620 268 / 5e-88 myb domain protein 36 (.1) Potri.018G058800 [exp] 203 / 6e-64 AT3G49690 224 / 1e-72 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10026543 pacid=23164393 polypeptide=Lus10026543 locus=Lus10026543.g ID=Lus10026543.BGIv1.0 annot-version=v1.0 ATGGGAAGAGCACCATGCTGTGACAAGGCCAATGTGAAGAAAGGTCCATGGTCTCCTGAAGAAGATGCTAAGCTCAAGGACTACATCCACCAGAATGGCA CTGGTGGCAACTGGATTTCCCTCCCTCGGAAAGCTGGTCTAAAGAGATGTGGGAAAAGCTGCAGGCTGAGATGGCTTAACTACTTGAGACCAAACATCAA ACATGGAGAATTCACTGATGATGAAGACAGAATCATTTGCACCCTTTTTGCTAACATTGGAAGCAGATGGTCAATAATAGCAGCTCAGTTGCCAGGCAGG ACTGATAACGATATAAAAAACTACTGGAACACCAAGCTCAAGAAGAAACTCATGGGTACTTTGCTCCCACAAAATTCTTCCTCCTCCTCCCACAGAAAAT TACCCTTTCATCCCCACCATCTCGCTAGCTACGCATCGCTCCTCCAATCTTCGTCACTTTCCAATTCAGTACTCACCTCCTCCAATTCATCACTCTCAGT TGACCACCCATCACCTAATCACAGCACTAACCCTTTCGAATCAAACCACAACAATTACGGGCTAACCAGGCCGATAATCGCGAATGATCATCAGTTAACC AGCAGCAACAATTCCTGCTCCTTCAACTCGGCTATGCAACAACATTACCAGGTGAAAGATGGAGTCTTTAAGTTTGGAGGAGCCACTGAAGCAAGTTGCA GCTCATCAGATGGAAGTTCAAACAATGTTCTTCAGCATCAGGCTAATAAGGAGTTTGATTATGATCACAATGAGCAGCATCAACAGTTGTTCAAGATGGG TGGTTATAGCCAGCAGGGGAGTGTGATTAGTACTACTAATTTCACCGACTACATAAGTAGTACAGCTGGTTTATGTAATCAGATGATCATGAACAGTCCA AATTTGGAAGATTATGGTCTGGAGGAGATCAAGCAGCTTGTGAGCACTTGCAATAACAATAATAACTTGTTACTGTTTGATGAGAACAGGAAAGAGGAGA GGGTTATGTTCTACTGA
AA sequence Show only first row Show all	>Lus10026543 pacid=23164393 polypeptide=Lus10026543 locus=Lus10026543.g ID=Lus10026543.BGIv1.0 annot-version=v1.0 MGRAPCCDKANVKKGPWSPEEDAKLKDYIHQNGTGGNWISLPRKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDDEDRIICTLFANIGSRWSIIAAQLPGR TDNDIKNYWNTKLKKKLMGTLLPQNSSSSSHRKLPFHPHHLASYASLLQSSSLSNSVLTSSNSSLSVDHPSPNHSTNPFESNHNNYGLTRPIIANDHQLT SSNNSCSFNSAMQQHYQVKDGVFKFGGATEASCSSSDGSSNNVLQHQANKEFDYDHNEQHQQLFKMGGYSQQGSVISTTNFTDYISSTAGLCNQMIMNSP NLEDYGLEEIKQLVSTCNNNNNLLLFDENRKEERVMFY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10026543 [exp]	0	1
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10005151 [exp]	1.0	0.9606
AT1G11655			unknown protein		Lus10002065 [exp]	3.0	0.9290
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10014082 [exp]	3.7	0.9422
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001274 [exp]	6.5	0.9169
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10020091 [exp]	6.7	0.8928
AT1G51340			MATE efflux family protein (.1...		Lus10026303 [exp]	9.2	0.9230
AT2G30150			UDP-Glycosyltransferase superf...		Lus10042262 [exp]	9.3	0.8706
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10016310 [exp]	9.8	0.9262
AT4G18010		AT5PTASE2, IP5P...	INOSITOL\(1,4,5\)P3 5-PHOSPHAT...		Lus10003010 [exp]	11.0	0.8326
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10006731 [exp]	11.4	0.8751

Compare expression of checked genes

Lus10026543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.