Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42005 472 / 9e-166 Transmembrane amino acid transporter family protein (.1) AT4G38250 467 / 1e-163 Transmembrane amino acid transporter family protein (.1) AT5G65990 419 / 1e-144 Transmembrane amino acid transporter family protein (.1) AT3G11900 194 / 2e-57 ANT1 aromatic and neutral transporter 1 (.1) AT5G15240 69 / 2e-12 Transmembrane amino acid transporter family protein (.1.2) AT2G39130 64 / 9e-11 Transmembrane amino acid transporter family protein (.1) AT3G54830 56 / 3e-08 Transmembrane amino acid transporter family protein (.1) AT5G02170 52 / 4e-07 Transmembrane amino acid transporter family protein (.1.2) AT3G09330 51 / 1e-06 Transmembrane amino acid transporter family protein (.1) AT3G09340 50 / 1e-06 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022995 [exp] 579 / 0 AT2G42005 580 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10001390 [exp] 576 / 0 AT2G42005 581 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10013835 [exp] 211 / 2e-67 AT2G42005 178 / 2e-55 Transmembrane amino acid transporter family protein (.1) Lus10021089 [exp] 197 / 2e-58 AT3G11900 501 / 2e-176 aromatic and neutral transporter 1 (.1) Lus10017224 [exp] 196 / 3e-58 AT3G11900 502 / 3e-177 aromatic and neutral transporter 1 (.1) Lus10012824 [exp] 51 / 9e-07 AT5G15240 425 / 3e-147 Transmembrane amino acid transporter family protein (.1.2) Lus10038702 [exp] 49 / 4e-06 AT2G39130 556 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10030469 [exp] 49 / 5e-06 AT5G15240 405 / 4e-139 Transmembrane amino acid transporter family protein (.1.2) Lus10037974 [exp] 49 / 6e-06 AT2G39130 551 / 0.0 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G167900 [exp] 516 / 0 AT4G38250 583 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G206800 [exp] 512 / 0 AT2G42005 592 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.005G102300 [exp] 489 / 2e-172 AT4G38250 539 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.016G064500 [exp] 208 / 8e-63 AT3G11900 521 / 0.0 aromatic and neutral transporter 1 (.1) Potri.010G226000 [exp] 59 / 3e-09 AT2G39130 708 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.017G083700 [exp] 57 / 1e-08 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.002G114300 [exp] 55 / 4e-08 AT3G30390 516 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.008G036300 [exp] 51 / 9e-07 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.017G106300 [exp] 48 / 8e-06 AT3G30390 625 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.010G169000 [exp] 48 / 9e-06 AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10026549 pacid=23164387 polypeptide=Lus10026549 locus=Lus10026549.g ID=Lus10026549.BGIv1.0 annot-version=v1.0 ATGGTGTTCGAGAGGGACAGAGCATCATCGGGGGCATCAAACGCCCTGAAACCGACGGAGAAAACCCCTCTAATCATCCACCATCCCCGCTATCAAAACA GCAACCTGTCATCTGAATCGAAGACCGTCGCCAATCTCTTCATCGCCATCGTCGGTGCCGGCGTCCTCGGCCTCCCTTACTCCTTCAAGCGCACAGGATG GATAATGAGCCTAATCATGCTCTTCTCCGTCTCCGCCCTCTCCTACTACTGCATGCTCCTCCTCGTCCGCACCCGCCGCAAGCTCCAATCCTCCTCTTCC TCCTCCATCGACTCCTTTGGCGACCTGGGTTTCGTCGTCTGCGGCTCCTTCGGCAGGTTAATCGTCGACGTAATGATCGTCCTCTCTCAAGCAGGATTCT GTGTCGGCTACTTGATCTTCATCAGCAACACCGTTGATCACCTAATGTCCGCCCAATTCGTCGCGATTTCTCCCAAAACACTAATCGTATGGGCATGCTT CCCTTTCCAATTGGGGCTCAATTCAATCGCGACGCTCACACATTTAGCTCCCCTGAGCATATTCGCCGACGTGGTAGACCTAGCTGCAATGGGGGTTGTG ATAGTCGAAGATGTCTCGATTATATCCCAAAACAATACCGTCGAAGAAGTCAAGGCGTTTGGGAGTCTGTCGGTATTCTTCTACGGAATGGGCGTCGCCG TCTACGCATTCGAAGGAATCGGAATGGTTCTACCTCTGGAATCGGAAGCCAAACACAAGGACAAATTCGGGAGAAACTTGGCCTTTGCGATGGGATTCAT CTCGGCGATCTACGGAGCCTTTGGAGCGTTGGGTTACCTAGCGTTTGGTAACGAGACTAAAGACATCATAACTGCAAATCTCGGAGTCGGGTCGGTCAGT ACGTTGGTGCAGATCGGGTTGTGTATAAACCTGTTTTTTACGTTTCCGTTGATGATGAACCCGGTTTACGAGATCGTGGAGAGGCGGTTCTGTAATGGAA TGTACTGTCTGTGGTTGAGGTGGATGCTGGTGTTTGTTGTGAGCTTGGTGGCGTTGTTGGTTCCAAATTTCACGGATTTCTTGTCTCTGGTTGGGAGCAG TGTGTGTTGTGGATTGGGGTTTGTGCTTCCTGCGTTGTTTCATTTGATTGCGTTCAAAGATGAAATCGGGTGGGGAGGTTGGACCGTTGATGTTGGGATT GTGTCTGTAGGTGTTGTTCTTGGTGTTTCCGGGACTTGGTGCTCTCTCGTTGAGATTTTTGATATTAAGGTTTAG
AA sequence Show only first row Show all	>Lus10026549 pacid=23164387 polypeptide=Lus10026549 locus=Lus10026549.g ID=Lus10026549.BGIv1.0 annot-version=v1.0 MVFERDRASSGASNALKPTEKTPLIIHHPRYQNSNLSSESKTVANLFIAIVGAGVLGLPYSFKRTGWIMSLIMLFSVSALSYYCMLLLVRTRRKLQSSSS SSIDSFGDLGFVVCGSFGRLIVDVMIVLSQAGFCVGYLIFISNTVDHLMSAQFVAISPKTLIVWACFPFQLGLNSIATLTHLAPLSIFADVVDLAAMGVV IVEDVSIISQNNTVEEVKAFGSLSVFFYGMGVAVYAFEGIGMVLPLESEAKHKDKFGRNLAFAMGFISAIYGAFGALGYLAFGNETKDIITANLGVGSVS TLVQIGLCINLFFTFPLMMNPVYEIVERRFCNGMYCLWLRWMLVFVVSLVALLVPNFTDFLSLVGSSVCCGLGFVLPALFHLIAFKDEIGWGGWTVDVGI VSVGVVLGVSGTWCSLVEIFDIKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42005			Transmembrane amino acid trans...		Lus10026549 [exp]	0	1
AT1G10880			Core-2/I-branching beta-1,6-N-...		Lus10026386 [exp]	3.5	0.9617
					Lus10017305 [exp]	3.5	0.9751
AT4G35350		XCP1	xylem cysteine peptidase 1 (.1...		Lus10030722 [exp]	4.4	0.9774
AT5G61750			RmlC-like cupins superfamily p...		Lus10042616 [exp]	5.1	0.9757
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10025859 [exp]	5.6	0.9492
AT4G25850		ORP4B	OSBP(oxysterol binding protein...		Lus10006969 [exp]	8.5	0.9690
					Lus10018095 [exp]	9.8	0.9374
AT5G47635			Pollen Ole e 1 allergen and ex...		Lus10038781 [exp]	10.0	0.9553
AT4G22758			unknown protein		Lus10006995 [exp]	10.5	0.9326
AT5G48920		TED7	tracheary element differentiat...		Lus10028626 [exp]	10.6	0.9696

Compare expression of checked genes

Lus10026549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.