Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69560 235 / 9e-75 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT1G26780 229 / 3e-73 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) AT3G29020 201 / 7e-63 MYB ATMYB110 myb domain protein 110 (.1.2) AT5G17800 199 / 6e-61 MYB ATMYB56 myb domain protein 56 (.1) AT1G17950 191 / 9e-59 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1) AT1G73410 182 / 2e-55 MYB AtMYB54, BW54, MYB54 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, myb domain protein 54 (.1) AT4G33450 177 / 3e-53 MYB ATMYB69 myb domain protein 69 (.1) AT5G39700 151 / 4e-44 MYB ATMYB89 myb domain protein 89 (.1) AT2G39880 138 / 3e-37 MYB ATMYB25 myb domain protein 25 (.1) AT5G67300 134 / 2e-36 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030452 [exp] 520 / 0 AT1G69560 240 / 6e-77 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10005683 [exp] 201 / 1e-61 AT5G17800 212 / 1e-66 myb domain protein 56 (.1) Lus10029746 [exp] 195 / 3e-59 AT1G17950 199 / 1e-62 myb domain protein 52 (.1) Lus10018936 [exp] 190 / 7e-58 AT1G69560 206 / 6e-65 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10031900 [exp] 191 / 3e-57 AT1G17950 220 / 2e-70 myb domain protein 52 (.1) Lus10028638 [exp] 189 / 4e-57 AT1G17950 206 / 7e-66 myb domain protein 52 (.1) Lus10031326 [exp] 190 / 6e-57 AT1G17950 219 / 3e-70 myb domain protein 52 (.1) Lus10010260 [exp] 138 / 3e-37 AT5G67300 288 / 5e-96 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) Lus10020309 [exp] 136 / 4e-37 AT1G69560 140 / 3e-39 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088000 [exp] 251 / 1e-79 AT1G69560 229 / 2e-71 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.010G167500 [exp] 249 / 1e-78 AT1G69560 237 / 8e-75 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.017G085200 [exp] 232 / 4e-72 AT1G69560 215 / 2e-66 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.019G040900 [exp] 223 / 4e-69 AT1G26780 211 / 4e-66 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) Potri.012G039400 [exp] 203 / 3e-63 AT1G17950 267 / 1e-90 myb domain protein 52 (.1) Potri.015G033600 [exp] 202 / 3e-63 AT1G17950 254 / 1e-85 myb domain protein 52 (.1) Potri.013G067000 [exp] 206 / 2e-62 AT5G17800 189 / 6e-57 myb domain protein 56 (.1) Potri.005G186400 [exp] 195 / 5e-59 AT1G17950 197 / 1e-61 myb domain protein 52 (.1) Potri.002G073500 [exp] 193 / 2e-58 AT1G17950 202 / 9e-64 myb domain protein 52 (.1) Potri.007G106100 [exp] 189 / 1e-57 AT4G33450 207 / 2e-66 myb domain protein 69 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10026611 pacid=23164233 polypeptide=Lus10026611 locus=Lus10026611.g ID=Lus10026611.BGIv1.0 annot-version=v1.0 ATGAAGCCATGGCCAGAAAGAACAGAAGCTCATCATACATCTTCTTGTTCTTCACCAATGGTGGCAATGGTGAATGCAGACATTGCTTCACTCACTCTCT CATCAGCTTCCCCTGCATCTCTTTTCCCTTCTGACTGTACCACCACCACCACCACCTCCAATGAAGAAGATAACAAGATAAAGGAGACTACTTTAGTACT GACAGAATGTGGACAGTCAAAGCTTTGTGCCAGAGGACATTGGAGGCCAGCTGAGGATTCAAAGCTCAAGGAGCTTGTTTCCCTTTATGGCCCTCAGAAT TGGAACCTCATTGCTGAGAAATTGGAAGGCAGATCAGGGAAGAGCTGCAGATTGAGGTGGTTTAACCAGCTGGATCCAAGGATAAACAGGAGGGCATTCA GTGAAGATGAGGAAGAGAGGTTGATGCAGGCTCATAGGGTTTATGGTAACAAGTGGGCAATGATTGCTAGGCTTTTCCCAGGGAGGACTGACAATGCTGT GAAGAACCATTGGCATGTTATAATGGCTAGGAAGTATAGAGAGCAGTCTAGTGCTTACAGCAGGAGGAAGCTTAGTAACTCAAATGGTAATGGTAATGGT AATGGTGGAAGTTGCAGTAACAACAGTGGCGGAGATAGTGGTAGCAACAATAGCTACAACAACAACACTTACTCTTCTTCTTCTCCTCCTTGTTCAAGAA TGGATGAAATGATGATGATGATCCCAACAGCAAGCTTGTTTCACCAGAACCAAGTTGGAGGAGATCAGCAGCATCACTTCATTAATGGTGGGAGAGGAAT AATCAAAGGAGGCGGTGGCTTTGTTGTTCCTCACCAGCAGACAACCTTTGATTTCTTTCCTGGTGGGAAGAGCAGCAGCAATGAGATGATGATAATGGGG ATGCTGAGCCAGAGCAGATCTTGCTGGGATCATCATCAATATCATCAAAGCAATGGTAACAACAACAACAACAACTTAGCAATACAACAGTCAAATTACT CCTTGAACCAAAGGATTCATCATCCAACTCATCATCGAATGGTGATTTCTTCTTCTTCATCATTTGGAGATCATCAAGAGAGATCATCATCATCATCAGC TGTAGTTAGCAGTAGCAGTAACAATCCACCACCATTCATTGACTTTCTTGGAGTAGGAGCCACTTGA
AA sequence Show only first row Show all	>Lus10026611 pacid=23164233 polypeptide=Lus10026611 locus=Lus10026611.g ID=Lus10026611.BGIv1.0 annot-version=v1.0 MKPWPERTEAHHTSSCSSPMVAMVNADIASLTLSSASPASLFPSDCTTTTTTSNEEDNKIKETTLVLTECGQSKLCARGHWRPAEDSKLKELVSLYGPQN WNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEDEEERLMQAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYSRRKLSNSNGNGNG NGGSCSNNSGGDSGSNNSYNNNTYSSSSPPCSRMDEMMMMIPTASLFHQNQVGGDQQHHFINGGRGIIKGGGGFVVPHQQTTFDFFPGGKSSSNEMMIMG MLSQSRSCWDHHQYHQSNGNNNNNNLAIQQSNYSLNQRIHHPTHHRMVISSSSSFGDHQERSSSSSAVVSSSSNNPPPFIDFLGVGAT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10026611 [exp]	0	1
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10030452 [exp]	1.0	0.9845
AT4G28100			unknown protein		Lus10018524 [exp]	2.8	0.8923
AT2G14660			unknown protein		Lus10033766 [exp]	3.5	0.8981
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10022409 [exp]	9.8	0.8556
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10038607 [exp]	10.2	0.8598
AT4G31350			Core-2/I-branching beta-1,6-N-...		Lus10020159 [exp]	11.2	0.8945
AT4G10810			unknown protein		Lus10010114 [exp]	21.2	0.8581
AT2G30620			winged-helix DNA-binding trans...		Lus10005534 [exp]	28.5	0.8455
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10042643 [exp]	30.2	0.8656
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10004687 [exp]	30.4	0.8903

Compare expression of checked genes

Lus10026611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.