Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01140 289 / 2e-96 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT5G15310 286 / 2e-96 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G61250 245 / 3e-80 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT4G21440 229 / 2e-73 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT1G34670 226 / 4e-72 MYB ATMYB93 myb domain protein 93 (.1) AT3G02940 224 / 1e-71 MYB ATMYB107 myb domain protein 107 (.1) AT4G05100 218 / 2e-69 MYB ATMYB74 myb domain protein 74 (.1) AT5G16770 218 / 4e-69 MYB ATMYB9 myb domain protein 9 (.1.2) AT4G28110 214 / 2e-68 MYB ATMYB41 myb domain protein 41 (.1) AT5G60890 210 / 1e-66 MYB AtMYB34, MYB34, ATR1 ALTERED TRYPTOPHAN REGULATION 1, myb domain protein 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033003 [exp] 290 / 7e-97 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10015712 [exp] 265 / 5e-88 AT3G01140 269 / 5e-88 NOECK, myb domain protein 106 (.1) Lus10019086 [exp] 258 / 3e-85 AT3G01140 272 / 1e-89 NOECK, myb domain protein 106 (.1) Lus10015376 [exp] 233 / 4e-75 AT5G15310 266 / 9e-88 myb domain protein 16 (.1.2) Lus10030378 [exp] 228 / 1e-73 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10014784 [exp] 226 / 4e-73 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10041142 [exp] 215 / 2e-68 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10018418 [exp] 215 / 3e-68 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 214 / 7e-68 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G165700 [exp] 337 / 2e-115 AT3G01140 302 / 3e-100 NOECK, myb domain protein 106 (.1) Potri.008G089700 [exp] 334 / 3e-114 AT5G15310 291 / 1e-96 myb domain protein 16 (.1.2) Potri.008G089200 [exp] 328 / 6e-112 AT3G01140 289 / 4e-95 NOECK, myb domain protein 106 (.1) Potri.017G086300 [exp] 303 / 1e-101 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.002G157600 [exp] 240 / 4e-78 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.014G081200 [exp] 235 / 3e-76 AT3G61250 352 / 6e-122 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.004G033100 [exp] 229 / 5e-73 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.005G074500 [exp] 228 / 5e-73 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.011G041600 [exp] 226 / 4e-72 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.007G093900 [exp] 225 / 5e-72 AT1G34670 289 / 6e-96 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10026620 pacid=23164364 polypeptide=Lus10026620 locus=Lus10026620.g ID=Lus10026620.BGIv1.0 annot-version=v1.0 ATGGTGAGGTCTCCATGCTGTCAGAAAGTAGGGTTGAAGAAAGGGCCATGGACACCTGAAGAAGACCAGAAGCTCTTGGCTTACATTGAGAAGCATGGCC ATGGCAGCTGGAGAGCCCTCCCTGCAAAAGCTGGGCTCCAAAGATGTGGGAAAAGTTGCAGGCTGAGGTGGACCAATTACCTTAGGCCAGATAGCAAAAG AGGAAAGTTCAGTCTCCAAGAGGAGCAGACTATTATCCAACTCCATGCCCTTCTCGGAAACAGGTGGGCAGCCATAGCGAGCCACCTGGATAAGAGGACA GACAACGAGATCAAGAACCACTGGAACACTCACCTCAAGAAGAGGCTTGAGCGGATGGGAATCGACCCGGCCACCCACAAACCGAAAACCCCGATCACCA TGGACGCCAACGGCCACTACAACTCATCCAAGGAAGCAGCCACGTTGAGCCACATGGCCCAATGGGAATCCGCCAGGTTGGAAGCCGAAGCCAGACTGGT CCGCGAATCAATCCCGAAAATCAAACCACCCAACAACAACAACAACAACAAATGCCCACCAAGTGTTCGATCAAAGTCCTCAACGAGCCGGCCAATCTGC CTCGACGTCCTCCGAGCTTGGCAAGGCCTGATCGGCGACAACGACAAGGATGGCTCGGCCTCCTCCCTCGAGTCCCCCACCTCCATCCTTAACTTCCCGC CGGCGGATGTTCCTCCGCCGCCAACCGGCGACGAGCTGGCAGTTTCCGTCGGAGGCGTCATTTGGAGCCCTGTGGTGATTCCGGGATTCGGGGACGGAGG GATATCGGACGTGGTTTTGGGTACAGGGTCGCCTGCGGGGGCGGGGGCGGGGGCGGGGGCNNNNNNNNCGGTGATGTGA
AA sequence Show only first row Show all	>Lus10026620 pacid=23164364 polypeptide=Lus10026620 locus=Lus10026620.g ID=Lus10026620.BGIv1.0 annot-version=v1.0 MVRSPCCQKVGLKKGPWTPEEDQKLLAYIEKHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDSKRGKFSLQEEQTIIQLHALLGNRWAAIASHLDKRT DNEIKNHWNTHLKKRLERMGIDPATHKPKTPITMDANGHYNSSKEAATLSHMAQWESARLEAEARLVRESIPKIKPPNNNNNNKCPPSVRSKSSTSRPIC LDVLRAWQGLIGDNDKDGSASSLESPTSILNFPPADVPPPPTGDELAVSVGGVIWSPVVIPGFGDGGISDVVLGTGSPAGAGAGAGXXXXVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10026620 [exp]	0	1
AT4G39160	MYB		Homeodomain-like superfamily p...		Lus10023544 [exp]	6.5	0.6918
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10000492 [exp]	22.1	0.6401
AT3G61680			alpha/beta-Hydrolases superfam...		Lus10040915 [exp]	23.2	0.6922
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Lus10021019 [exp]	74.2	0.6555
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10007325 [exp]	90.3	0.5630
					Lus10008923 [exp]	132.5	0.5369
AT5G65530			Protein kinase superfamily pro...		Lus10012727 [exp]	141.4	0.5909
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10031392 [exp]	142.0	0.6114
AT5G65090		DER4, MRH3, BST...	DEFORMED ROOT HAIRS 4, BRISTLE...		Lus10041708 [exp]	146.2	0.5457
AT2G41970			Protein kinase superfamily pro...		Lus10017242 [exp]	158.4	0.5634

Compare expression of checked genes

Lus10026620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.