Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27035 118 / 3e-34 AtENODL20 early nodulin-like protein 20 (.1) AT5G15350 100 / 7e-27 AtENODL17 early nodulin-like protein 17 (.1) AT4G12880 92 / 2e-24 AtENODL19 early nodulin-like protein 19 (.1.2) AT3G01070 82 / 7e-20 AtENODL16 early nodulin-like protein 16 (.1) AT2G23990 66 / 2e-13 AtENODL11 early nodulin-like protein 11 (.1.2) AT4G30590 64 / 8e-13 AtENODL12 early nodulin-like protein 12 (.1) AT4G32490 64 / 1e-12 AtENODL4 early nodulin-like protein 4 (.1) AT2G25060 61 / 9e-12 AtENODL14 early nodulin-like protein 14 (.1) AT3G27200 59 / 4e-11 Cupredoxin superfamily protein (.1) AT4G28365 59 / 4e-11 AtENODL3 early nodulin-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025535 [exp] 140 / 5e-40 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10005229 [exp] 121 / 2e-35 AT2G27035 124 / 7e-37 early nodulin-like protein 20 (.1) Lus10025536 [exp] 114 / 2e-32 AT2G27035 148 / 5e-46 early nodulin-like protein 20 (.1) Lus10005231 [exp] 91 / 4e-23 AT5G15350 192 / 8e-63 early nodulin-like protein 17 (.1) Lus10030690 [exp] 91 / 4e-23 AT5G15350 190 / 4e-62 early nodulin-like protein 17 (.1) Lus10026064 [exp] 80 / 4e-19 AT5G15350 113 / 4e-32 early nodulin-like protein 17 (.1) Lus10014356 [exp] 77 / 4e-18 AT5G15350 108 / 2e-30 early nodulin-like protein 17 (.1) Lus10041570 [exp] 62 / 4e-12 AT3G27200 167 / 2e-53 Cupredoxin superfamily protein (.1) Lus10018617 [exp] 61 / 1e-11 AT4G28365 150 / 5e-46 early nodulin-like protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G219900 [exp] 150 / 1e-46 AT2G27035 136 / 2e-41 early nodulin-like protein 20 (.1) Potri.001G219800 [exp] 137 / 3e-41 AT2G27035 130 / 1e-38 early nodulin-like protein 20 (.1) Potri.017G088500 [exp] 126 / 2e-37 AT2G27035 122 / 7e-36 early nodulin-like protein 20 (.1) Potri.017G088600 [exp] 107 / 9e-30 AT5G15350 194 / 5e-64 early nodulin-like protein 17 (.1) Potri.004G121100 [exp] 96 / 2e-25 AT5G15350 149 / 4e-46 early nodulin-like protein 17 (.1) Potri.001G043600 [exp] 86 / 2e-21 AT5G15350 121 / 2e-35 early nodulin-like protein 17 (.1) Potri.003G183300 [exp] 86 / 2e-21 AT5G15350 123 / 1e-35 early nodulin-like protein 17 (.1) Potri.001G332200 [exp] 62 / 2e-12 AT3G27200 171 / 5e-55 Cupredoxin superfamily protein (.1) Potri.003G047300 [exp] 61 / 1e-11 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1) Potri.002G074000 [exp] 58 / 2e-11 AT2G02850 154 / 1e-49 plantacyanin (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10026749 pacid=23176595 polypeptide=Lus10026749 locus=Lus10026749.g ID=Lus10026749.BGIv1.0 annot-version=v1.0 ATGATAGCGGCGGTGTTGGTCGTGACGATGACGGCTTCGACGGCAACGGCGACGGGGAATGCGACGGCGCCGGTGAAGGAAAGGATGGTATACGTTGGAG GAGGGAGGGAGACATGGGGGCCTAACCGTAATCTCACTGAGTGGTCGTCTCGCCAACACTTCTACGTTGGTAACTGGCTATATTTCGGGTTTGACAAGAG CATGTACAGCGTGCTAGAGGTGAACAAGACGAGCTACAAGACATGCAACGAAGCCGGATTCATTCATAACATCACAAGAGGAGGACGCGACGTGTACAAA CTGAAGAAAGCCAAGAATTACTATTTCATCTCCGGCGGAGGGTTCTGCTTCAGCGGTTTGAAAGTCGCCATCCATGTAGAGAAGCACCCTCCGGCACCTG CTCCGGCTCCCGCGAAGAACTTTGCTCCGTCGCCGATTTCCACTGCCCATTTGGCTTTTGCTCTTGTTGCAGCTCTTGCCACTGGCCTCTCAACATTAGT GTTCTAG
AA sequence Show only first row Show all	>Lus10026749 pacid=23176595 polypeptide=Lus10026749 locus=Lus10026749.g ID=Lus10026749.BGIv1.0 annot-version=v1.0 MIAAVLVVTMTASTATATGNATAPVKERMVYVGGGRETWGPNRNLTEWSSRQHFYVGNWLYFGFDKSMYSVLEVNKTSYKTCNEAGFIHNITRGGRDVYK LKKAKNYYFISGGGFCFSGLKVAIHVEKHPPAPAPAPAKNFAPSPISTAHLAFALVAALATGLSTLVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10026749 [exp]	0	1
AT1G50560		CYP705A25	"cytochrome P450, family 705, ...		Lus10015706 [exp]	1.0	0.9098
AT2G15220			Plant basic secretory protein ...		Lus10014107 [exp]	1.4	0.8842
					Lus10039943 [exp]	2.4	0.8385
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10002621 [exp]	8.6	0.7246
AT2G48020			Major facilitator superfamily ...		Lus10042676 [exp]	9.9	0.7498
AT5G51490			Plant invertase/pectin methyle...		Lus10027203 [exp]	12.2	0.7931
					Lus10037861 [exp]	12.5	0.8111
AT4G05030			Copper transport protein famil...		Lus10039093 [exp]	13.7	0.7785
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10037952 [exp]	14.0	0.8111
					Lus10003272 [exp]	15.3	0.8111

Compare expression of checked genes

Lus10026749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.