Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21105 742 / 0 Plant L-ascorbate oxidase (.1.2.3) AT5G21100 682 / 0 Plant L-ascorbate oxidase (.1) AT4G39830 536 / 0 Cupredoxin superfamily protein (.1) AT5G05390 211 / 4e-61 LAC12 laccase 12 (.1) AT2G46570 207 / 1e-59 LAC6 laccase 6 (.1) AT2G30210 204 / 3e-58 LAC3 laccase 3 (.1) AT5G03260 202 / 8e-58 LAC11 laccase 11 (.1) AT5G48100 201 / 5e-57 LAC15, TT10, ATLAC15 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) AT3G09220 199 / 1e-56 LAC7 laccase 7 (.1) AT2G29130 199 / 1e-56 LAC2, ATLAC2 laccase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025538 [exp] 1102 / 0 AT5G21105 792 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Lus10009603 [exp] 553 / 0 AT4G39830 754 / 0.0 Cupredoxin superfamily protein (.1) Lus10000871 [exp] 552 / 0 AT4G39830 756 / 0.0 Cupredoxin superfamily protein (.1) Lus10022504 [exp] 549 / 0 AT4G39830 828 / 0.0 Cupredoxin superfamily protein (.1) Lus10016808 [exp] 547 / 0 AT4G39830 824 / 0.0 Cupredoxin superfamily protein (.1) Lus10040936 [exp] 213 / 8e-62 AT1G18140 790 / 0.0 laccase 1 (.1) Lus10009645 [exp] 214 / 1e-61 AT1G18140 801 / 0.0 laccase 1 (.1) Lus10034614 [exp] 211 / 8e-61 AT5G60020 934 / 0.0 laccase 17 (.1) Lus10040697 [exp] 211 / 9e-61 AT2G38080 828 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G159700 [exp] 835 / 0 AT5G21105 760 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Potri.001G219300 [exp] 834 / 0 AT5G21105 758 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Potri.010G171700 [exp] 565 / 0 AT4G39830 799 / 0.0 Cupredoxin superfamily protein (.1) Potri.007G088358 [exp] 540 / 0 AT4G39830 831 / 0.0 Cupredoxin superfamily protein (.1) Potri.007G088222 [exp] 537 / 0 AT4G39830 847 / 0.0 Cupredoxin superfamily protein (.1) Potri.005G079400 [exp] 533 / 0 AT4G39830 828 / 0.0 Cupredoxin superfamily protein (.1) Potri.001G454700 [exp] 509 / 1e-175 AT4G39830 619 / 0.0 Cupredoxin superfamily protein (.1) Potri.007G088290 [exp] 241 / 4e-76 AT4G39830 363 / 1e-123 Cupredoxin superfamily protein (.1) Potri.010G193100 [exp] 217 / 3e-63 AT2G38080 771 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.014G100600 [exp] 215 / 2e-62 AT2G46570 831 / 0.0 laccase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10026753 pacid=23176554 polypeptide=Lus10026753 locus=Lus10026753.g ID=Lus10026753.BGIv1.0 annot-version=v1.0 ATGGGCCGCCGGGTTCATGTGTTGATGATGGTAATGTGTCTGGCCGCCGTCCAAGGTTGCTGGGGGAAAACTAGGCATTTCAAATGGGACGTGGAGTACA TGTTCTGGTCACCGGACGGCGAGGAGCATACTGTCATGGGTATCAACGGCCAGTTTCCGGGTCCGACGATTAGGGCCAAAGTCGGCGACATAATCCACGT GGACCTCACCAACAAGCTCCATACCGAGGGAGTTGTTATTCACTGGCACGGCATCAGACAGCAAGGGACTCCATGGGCAGATGGGACAGCTGCAATCTCA CAGTGCGCCATTGCTCCTGGTGAAACTTTCCCTTACAGGTTCACTGTTGACAAGGCAGGGACATATTTCTACCACGGCCATTACGGGATGCAAAGGTCAG CAGGGCTATACGGTTCATTGATAGTGGAAGCCGGAGATATAGTCGGGGAGAAAGATCCATTCCATTACGATGGCGAGTTCAACCTCTTGCTCAGCGACTG GTGGCATAAAAGTGTCCACGACCAAGAAGTCGGCCTCTCTTCCCTCCCCTTCCGGTGGATCAACGAACCTGATACTTTGCTGGTTAATGGGAGAGGGCAG TACAACTGTTCACTAGCAGCAAAGTATAACAAGACATCAGCATCATTGCCACAGTGTAAGCTAAGAGGGAGTGAGCAATGGGCCCCAAATGTGCTCAAAG TGCTACCAAACAAGACTTACAGGCTCAGAATTGCCAGCACCACTGCCTTGGCTTCTCTCAACTTAGCCATTGGAGGCCACAAAATGGTGGTGGTGGAAGC CGACGGGAACCACGTCCAACCATTTTCGACGGACGATATCGACATCTACTCCGGCGAGAGCTACTCGGTCCTCTTCACAACGGACCAAACCCCATCAAAC AACTACTGGATCTCCATCGGGGTCCGTGGCCGCCGCCCTCAAACGCCACAAGCATTAGTCCTCCTCAACTACCTCCCAAACTCCGCCTCCAAATTTCCCA CCTCACCTCCTCCGATCACCCCCCGGTGGGACGACTACGCTCACTCCAAATCCTTCACAAACAAAATCCTCGCCCTAATGGGCTCTCCAAAGCCCACGAA AAATGCCCACCGCCGGATCCAACTCCTCAACACCCAAAACCGGCTCAACGGATTCACCAAATGGGCCATCAACAACGTCTCGTTGACCCTGCCGTCAACG CCGTACATCGGGTCCATGAAACACAATCTCAAATCGGCATTCGACCAGACCCCGCCGCCGGATACCTTCAATCAAAACTACGACGTTTCGTCCCCACCGG TGAACGCCAACACCACGACGGGGAACGGGGTCTACGTGATCGAATTCGGGACGACGGTGGATGTGATCTTGCAGAACGCGAATGCTCTGTCGGCTAACGT GAGCGAGATTCACCCTTGGCATTTGCACGGGCATGATTTCTGGGTTCTAGGTTACGGAGATGGGAAGTTTGGCGACGGAAAGGGGAAAAGGTTGAATTTG AAGAATCCGCCGTTGAGGAACACGGCGGTGATATTCCCTTACGGGTGGACGGCGTTGAGGTTTGTGGCGGATAATCCTGGGGTTTGGGCTTTCCATTGTC ATATTGAGCCGCATTTGCATATGGGGATGGGGGTTGTTTTCGCCGAGGGTGTTGATCGGATTGGGGATGTGCCTAAGGAGGCGCTTGCCTGTGGATTGAC TGCTACTAGGTTATAA
AA sequence Show only first row Show all	>Lus10026753 pacid=23176554 polypeptide=Lus10026753 locus=Lus10026753.g ID=Lus10026753.BGIv1.0 annot-version=v1.0 MGRRVHVLMMVMCLAAVQGCWGKTRHFKWDVEYMFWSPDGEEHTVMGINGQFPGPTIRAKVGDIIHVDLTNKLHTEGVVIHWHGIRQQGTPWADGTAAIS QCAIAPGETFPYRFTVDKAGTYFYHGHYGMQRSAGLYGSLIVEAGDIVGEKDPFHYDGEFNLLLSDWWHKSVHDQEVGLSSLPFRWINEPDTLLVNGRGQ YNCSLAAKYNKTSASLPQCKLRGSEQWAPNVLKVLPNKTYRLRIASTTALASLNLAIGGHKMVVVEADGNHVQPFSTDDIDIYSGESYSVLFTTDQTPSN NYWISIGVRGRRPQTPQALVLLNYLPNSASKFPTSPPPITPRWDDYAHSKSFTNKILALMGSPKPTKNAHRRIQLLNTQNRLNGFTKWAINNVSLTLPST PYIGSMKHNLKSAFDQTPPPDTFNQNYDVSSPPVNANTTTGNGVYVIEFGTTVDVILQNANALSANVSEIHPWHLHGHDFWVLGYGDGKFGDGKGKRLNL KNPPLRNTAVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVDRIGDVPKEALACGLTATRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21105			Plant L-ascorbate oxidase (.1....		Lus10026753 [exp]	0	1
AT1G71020			ARM repeat superfamily protein...		Lus10043471 [exp]	1.0	0.9362
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10006391 [exp]	4.6	0.8975
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Lus10014147 [exp]	7.7	0.9226
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10016492 [exp]	9.2	0.9033
					Lus10025731 [exp]	11.5	0.9018
AT4G39120		HISN7, IMPL2	HISTIDINE BIOSYNTHESIS 7, myo-...		Lus10041968 [exp]	11.7	0.8274
					Lus10038634 [exp]	13.2	0.9046
AT5G56040			Leucine-rich receptor-like pro...		Lus10042090 [exp]	14.4	0.8380
AT3G49720			unknown protein		Lus10019279 [exp]	18.2	0.8756
AT4G39840			unknown protein		Lus10041688 [exp]	18.8	0.8698

Compare expression of checked genes

Lus10026753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.