Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11440 283 / 5e-89 MYB AtMYB65 myb domain protein 65 (.1) AT5G06100 261 / 7e-82 MYB ATMYB33 myb domain protein 33 (.1.2.3) AT2G26960 225 / 1e-68 MYB ATMYB81 myb domain protein 81 (.1) AT2G32460 223 / 4e-67 MYB ATMYB101, AtM1 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) AT4G26930 209 / 6e-63 MYB ATMYB97 myb domain protein 97 (.1) AT5G55020 213 / 8e-63 MYB ATMYB120 myb domain protein 120 (.1) AT5G10280 161 / 3e-45 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT3G01530 157 / 4e-45 MYB ATMYB57 myb domain protein 57 (.1) AT4G21440 160 / 1e-44 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G40350 153 / 1e-43 MYB ATMYB24 myb domain protein 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036103 [exp] 872 / 0 AT3G11440 307 / 1e-98 myb domain protein 65 (.1) Lus10008685 [exp] 304 / 8e-96 AT3G11440 357 / 3e-115 myb domain protein 65 (.1) Lus10026142 [exp] 297 / 1e-89 AT3G11440 370 / 5e-115 myb domain protein 65 (.1) Lus10040063 [exp] 220 / 4e-66 AT2G32460 229 / 1e-69 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10027189 [exp] 219 / 1e-64 AT2G32460 243 / 1e-73 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10021539 [exp] 218 / 1e-63 AT2G32460 226 / 5e-67 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10035275 [exp] 212 / 5e-62 AT2G32460 233 / 5e-70 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10040139 [exp] 157 / 5e-45 AT5G16770 231 / 9e-76 myb domain protein 9 (.1.2) Lus10041435 [exp] 158 / 7e-44 AT1G68320 262 / 2e-86 myb domain protein 62 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G224500 [exp] 439 / 2e-150 AT3G11440 298 / 1e-94 myb domain protein 65 (.1) Potri.009G018700 [exp] 430 / 5e-147 AT5G06100 286 / 1e-90 myb domain protein 33 (.1.2.3) Potri.003G189700 [exp] 389 / 4e-130 AT5G06100 410 / 8e-138 myb domain protein 33 (.1.2.3) Potri.001G036000 [exp] 363 / 3e-120 AT5G06100 402 / 1e-134 myb domain protein 33 (.1.2.3) Potri.002G228700 [exp] 222 / 1e-66 AT2G32460 234 / 6e-71 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Potri.013G130900 [exp] 196 / 3e-55 AT5G06100 177 / 1e-48 myb domain protein 33 (.1.2.3) Potri.001G346600 [exp] 158 / 8e-46 AT3G27810 242 / 1e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.007G093900 [exp] 159 / 2e-44 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.003G094200 [exp] 158 / 6e-44 AT5G16770 251 / 1e-81 myb domain protein 9 (.1.2) Potri.004G033100 [exp] 158 / 8e-44 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10026787 pacid=23176600 polypeptide=Lus10026787 locus=Lus10026787.g ID=Lus10026787.BGIv1.0 annot-version=v1.0 ATGCCGAATGGGGGCGAGGAGAAGAAAAGGTCTAAGGGACGTCGAGAGTCGACGTTGGGGATTGAACAAGGTAGTAGTGCCCTAAAGAAGGGACCGTGGA CTTCTGGAGAAGATGCGATTCTGGTGGAGTATGTGACTAAGCATGGAGAAGGCAATTGGAATGCTGTCCAGAAACACTCTGGGTTGTCGAGATGTGGGAA AAGCTGCAGGCTCCGATGGGCAAATCATCTTAGACCAGACTTGAGGAAAGGTGCTTTCACTCCTGACGAAGAGCGCCTTATTATCGAACTGCATGCTAAA ATGGGCAACAAGTGGGCTCGAATGGCAGCTGAGATGCCCGGACGGACAGATAATGAAATTAAGAACTACTGGAACACGAGAATCAAAAGACAGCAACGTG CTGGACTGCCAATCTATCCTCCCGAGATCTGCTCGAAAATACGTGATGGAAGTCAAGAAAGCATGGGCACAGACAGTAATGCAGATGGTCTTCCTGATCC AGCACAAAATCATCTGAGAGAGATCCCAGAACTGAATTTCAAAAACTTGAAAATTAACCACGGAGTTCTTTCTTATTTGCCAAATCTTCTTGATGTTCCT GCAAGCAGCTTCCTAAAGCAAGGTCTGGGTTCAAGCCATGATTATGGTTTCATCCTCCCAACACTACCGCCTCCTCCAAAGCGGCTCAGAGCAGACAGCA TTCTCCCTGATGTAGATGGTAGTGCTGTCAGTAGTGGCTTCCCACCTTTCTGTCAATTCACAGACTATGCTTGCGAGAGCATCCCTGAGCATTTTGGCTG CTTAACTTCTCCGTATGATTCTGATGATCAGCCACCAATGGCTGTTCTACCAGGCAGTCATGCCTTATTACATGATGATTCTTCTTCTTCAGAGCCCGTA AGCAGGGCAATGAAGTTGGAGCTCCCTTCACTCCAATATACAGAAACTCAGCAGCTAGACAGCTGGGGGACGTCTTCTTCCCCGCTGCTTTCTGCTGACT CTGTTGATAATTTGATCCAAACACCTCCGACTGAGTCAGACTGTTTCTCTCCAAGAAGCAGCGGTCTCTTGGAAGCTGTACTCTACGAATCACAGATGCT GGGAAACATGAACGGGTCTTCTCTTGCTCCTGAGGACATGATGAACCACCCATCACAGCCCTTAAATTCCCGGAAGAGAGATTTGGAAGTGCAAACTGAC CCGAATTCGCCATTGGGTCATCCTGCTGCATCAGTGTTCAATGCAAGTACCCCGATGAGTGGAAGCTCATTAGATGAACCAGGAATTTGTATCATACTTG AATATGCTAAGTACACCTTCTGCATAGGGTATGAAATGAAGCAGGAGATGGGGAGCCAAGTTTCAACCCCATGTGTGGAGGATAATGATGGTAGCAGCTG TAGGCATATAGATTTCAGCAGGCCAGATGTCTTACTTGGCTTAGGGAGCTACTTCGGACTAAGCTAG
AA sequence Show only first row Show all	>Lus10026787 pacid=23176600 polypeptide=Lus10026787 locus=Lus10026787.g ID=Lus10026787.BGIv1.0 annot-version=v1.0 MPNGGEEKKRSKGRRESTLGIEQGSSALKKGPWTSGEDAILVEYVTKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPDLRKGAFTPDEERLIIELHAK MGNKWARMAAEMPGRTDNEIKNYWNTRIKRQQRAGLPIYPPEICSKIRDGSQESMGTDSNADGLPDPAQNHLREIPELNFKNLKINHGVLSYLPNLLDVP ASSFLKQGLGSSHDYGFILPTLPPPPKRLRADSILPDVDGSAVSSGFPPFCQFTDYACESIPEHFGCLTSPYDSDDQPPMAVLPGSHALLHDDSSSSEPV SRAMKLELPSLQYTETQQLDSWGTSSSPLLSADSVDNLIQTPPTESDCFSPRSSGLLEAVLYESQMLGNMNGSSLAPEDMMNHPSQPLNSRKRDLEVQTD PNSPLGHPAASVFNASTPMSGSSLDEPGICIILEYAKYTFCIGYEMKQEMGSQVSTPCVEDNDGSSCRHIDFSRPDVLLGLGSYFGLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026787 [exp]	0	1
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10036103 [exp]	1.0	0.8699
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Lus10008082 [exp]	7.4	0.8162
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10022401 [exp]	7.9	0.8398
AT3G50430			unknown protein		Lus10022468 [exp]	8.0	0.8373
AT2G46200			unknown protein		Lus10000549 [exp]	10.7	0.8409
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Lus10038546 [exp]	10.8	0.7974
AT3G01380			transferases;sulfuric ester hy...		Lus10039473 [exp]	11.5	0.8317
AT5G54090			DNA mismatch repair protein Mu...		Lus10015589 [exp]	19.6	0.8280
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10005521 [exp]	20.7	0.8328
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Lus10038820 [exp]	22.2	0.8137

Compare expression of checked genes

Lus10026787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.