Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09360 540 / 0 LAC14 laccase 14 (.1) AT5G48100 519 / 2e-180 LAC15, TT10, ATLAC15 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) AT2G30210 491 / 3e-169 LAC3 laccase 3 (.1) AT5G03260 485 / 2e-167 LAC11 laccase 11 (.1) AT2G29130 477 / 9e-164 LAC2, ATLAC2 laccase 2 (.1) AT5G05390 475 / 3e-163 LAC12 laccase 12 (.1) AT5G58910 474 / 3e-163 LAC16 laccase 16 (.1) AT5G60020 474 / 1e-162 LAC17, ATLAC17 laccase 17 (.1) AT2G38080 472 / 3e-162 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G07130 472 / 6e-162 LAC13 laccase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036070 [exp] 1017 / 0 AT5G09360 495 / 4e-171 laccase 14 (.1) Lus10041067 [exp] 538 / 0 AT5G09360 622 / 0.0 laccase 14 (.1) Lus10019122 [exp] 502 / 2e-173 AT5G60020 938 / 0.0 laccase 17 (.1) Lus10041066 [exp] 500 / 8e-173 AT5G09360 555 / 0.0 laccase 14 (.1) Lus10026512 [exp] 499 / 2e-172 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10034439 [exp] 496 / 2e-171 AT5G60020 943 / 0.0 laccase 17 (.1) Lus10023189 [exp] 494 / 9e-171 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10002227 [exp] 493 / 2e-170 AT5G03260 926 / 0.0 laccase 11 (.1) Lus10034614 [exp] 486 / 1e-167 AT5G60020 934 / 0.0 laccase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G088600 [exp] 702 / 0 AT5G09360 607 / 0.0 laccase 14 (.1) Potri.019G088700 [exp] 697 / 0 AT5G09360 599 / 0.0 laccase 14 (.1) Potri.019G088900 [exp] 696 / 0 AT5G09360 598 / 0.0 laccase 14 (.1) Potri.019G088800 [exp] 694 / 0 AT5G09360 599 / 0.0 laccase 14 (.1) Potri.019G088401 [exp] 683 / 0 AT5G09360 592 / 0.0 laccase 14 (.1) Potri.005G200600 [exp] 548 / 0 AT5G48100 607 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.005G200500 [exp] 545 / 0 AT5G48100 615 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.001G206200 [exp] 543 / 0 AT5G09360 796 / 0.0 laccase 14 (.1) Potri.005G200700 [exp] 542 / 0 AT5G48100 635 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.011G071100 [exp] 539 / 0 AT5G48100 612 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10026812 pacid=23176555 polypeptide=Lus10026812 locus=Lus10026812.g ID=Lus10026812.BGIv1.0 annot-version=v1.0 ATGCTGAGCGTGAACGGGTCATTCCCAGGTCCAACAATCAAAGTTCGTAGAGGAGATACGGCCTTTGTCAATGTCCACAACCATGGAACCTATGGTCTAA CTATTCACTGGCATGGAGTGAAGCAACCTCGAAACCCGTGGTCCGACGGTCCTGAAAATATAACACAGTGCCCAATTGAAGCTGGTAAGAATTTCACATA TGAGGTCATATTCTCCGATGAGGAAGGAACTCTGTGGTGGCATGCACACAACGAATGGACTCGAGCCACCGTCCATGGCGCCATTATTGTCTTGCCTCCC CTTGGAGCTAATTACCCTTTTCCAACTCCCTATGCCGATCAAACCCTTGTCATTGCATCATGGTTCAAGGGAGACGTGAAATCAATAATCGACGAAGCCC TCACCACGGGCGGCGACCCACGAGCGTCGGATGCCTTCACAATAAACGGCGAGCCAGGAGACCTCTACCAGTGTTCAAAGCAAACAACATTCCGAATGAC GGTCGACCCGGGCAAAACGTACCTCCTCCGCCTCATAAACGCCGTGATGAACGAAGAGCACTTTTTCGGAATCGCCAACCACACCCTCACCGTAGTCGGC CGCGATGGCGCTTACACAAAACCCTTCCCTACGCCCTACGTCATGATATCTCCCGGCCAAACAATGGACGTCTTACTCACCACCGCCAACCAGACCCAGC TGGCACAGTCACAGAACTACCACTACTACATGGTGTCTACGCCTTTCGAAGACGGGGATGTGCCGTTCGACAAGACGACGGCCACGGCCTTGATGCAGTA CTCCGGGATCTACCCTCAGCCGATGACGGTGCCGTTTCCGGCGATGCCGGCTTACGACGATAGCGTTGCGGCGGAAGGGTTCGCGGGAAAGTTGAGGAGC TTGGGGAGCGAAGAGCATCCGGTTAAGGTGCCCAAGGATGTCGGGATCAAGAGGTTGACGATAGCGATAGCGTTGAATGAGTTGGATTGTGTTAACGCAT CGTGTGACGGTCCTGACGGGAATAGGCTGGCCGCTAGTATGAATAATGTCAGTTTCGTCAGTCAAAGCGTTGACATCCTTGATGCCTACTACAGCAACCA AAAGGGGATATTCAATGATGATTTCCCAAGTGAACCCTTGAACAAATTCAACTTCACAGGAGACGCAGACGTGTCAGGGAAGACAAGCAGAGGAACAAAG GCCATAATGTTGGAGTACGGAGACACAGTGGAGATAGTGCTGCAAGGAACCAGCCTTAGTGCAGCTCAGAACCACCCGATCCACATCCATGGCTACAACG TCTACTTGGTCGGTGTCGGTAAGGGAAACTTCGACGTCAACACTCACCCGGCAAATTCCTACAACTTGGTCGACCCTCCTTTTGTGAACACCATCGGTGT CCCCAAAAACGGCTGGGCCGCCTTCAGATTCGTTGCCGATAATCCAGGGGTGTGGTTCATGCACTGTCACCTGGAGCGACATGCAACCTGGGGGATGGAA ACTGTTGTTATAGTTAAGAATGGGAATTCCACGGATGAACAAATTCGACCTCGTCCTGATCATATGCCTCTCTGCTCATCTTCTTAA
AA sequence Show only first row Show all	>Lus10026812 pacid=23176555 polypeptide=Lus10026812 locus=Lus10026812.g ID=Lus10026812.BGIv1.0 annot-version=v1.0 MLSVNGSFPGPTIKVRRGDTAFVNVHNHGTYGLTIHWHGVKQPRNPWSDGPENITQCPIEAGKNFTYEVIFSDEEGTLWWHAHNEWTRATVHGAIIVLPP LGANYPFPTPYADQTLVIASWFKGDVKSIIDEALTTGGDPRASDAFTINGEPGDLYQCSKQTTFRMTVDPGKTYLLRLINAVMNEEHFFGIANHTLTVVG RDGAYTKPFPTPYVMISPGQTMDVLLTTANQTQLAQSQNYHYYMVSTPFEDGDVPFDKTTATALMQYSGIYPQPMTVPFPAMPAYDDSVAAEGFAGKLRS LGSEEHPVKVPKDVGIKRLTIAIALNELDCVNASCDGPDGNRLAASMNNVSFVSQSVDILDAYYSNQKGIFNDDFPSEPLNKFNFTGDADVSGKTSRGTK AIMLEYGDTVEIVLQGTSLSAAQNHPIHIHGYNVYLVGVGKGNFDVNTHPANSYNLVDPPFVNTIGVPKNGWAAFRFVADNPGVWFMHCHLERHATWGME TVVIVKNGNSTDEQIRPRPDHMPLCSSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09360		LAC14	laccase 14 (.1)		Lus10026812 [exp]	0	1
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	2.6	0.9579
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	3.7	0.9579
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	4.6	0.9579
AT2G04810			Protein of unknown function (D...		Lus10020538 [exp]	5.3	0.9554
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10021213 [exp]	5.9	0.9536
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10024706 [exp]	6.0	0.8449
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10010220 [exp]	6.3	0.7731
AT3G44220			Late embryogenesis abundant (L...		Lus10005214 [exp]	7.0	0.9246
AT4G16270			Peroxidase superfamily protein...		Lus10017069 [exp]	7.7	0.9279
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020333 [exp]	7.9	0.8969

Compare expression of checked genes

Lus10026812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.