Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03330 436 / 2e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03350 142 / 4e-40 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G47350 94 / 9e-22 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT5G65205 87 / 2e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G47360 86 / 4e-19 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT5G10050 83 / 4e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 79 / 3e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G03980 79 / 9e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G17845 79 / 1e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G18210 79 / 1e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020265 [exp] 85 / 8e-19 AT3G03980 359 / 5e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019683 [exp] 84 / 2e-18 AT5G10050 315 / 3e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016430 [exp] 82 / 9e-18 AT5G10050 323 / 8e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002628 [exp] 81 / 2e-17 AT3G03980 358 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10043187 [exp] 80 / 1e-16 AT5G50600 404 / 4e-141 hydroxysteroid dehydrogenase 1 (.1) Lus10016429 [exp] 79 / 2e-16 AT5G10050 349 / 1e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032556 [exp] 78 / 4e-16 AT5G50600 411 / 4e-144 hydroxysteroid dehydrogenase 1 (.1) Lus10006248 [exp] 77 / 1e-15 AT1G67730 451 / 1e-160 beta-ketoacyl reductase 1 (.1) Lus10026260 [exp] 75 / 2e-15 AT1G10310 382 / 4e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G084100 [exp] 477 / 8e-171 AT3G03330 446 / 2e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G102000 [exp] 96 / 1e-22 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.012G101900 [exp] 96 / 1e-22 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.019G033500 [exp] 95 / 1e-22 AT3G03980 321 / 3e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G100000 [exp] 94 / 6e-22 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.015G099900 [exp] 92 / 2e-21 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.013G059100 [exp] 87 / 1e-19 AT3G03980 360 / 1e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G007300 [exp] 82 / 7e-18 AT5G10050 210 / 6e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G059000 [exp] 82 / 9e-18 AT4G13180 359 / 4e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G052300 [exp] 80 / 6e-17 AT1G67730 449 / 7e-160 beta-ketoacyl reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10026851 pacid=23142948 polypeptide=Lus10026851 locus=Lus10026851.g ID=Lus10026851.BGIv1.0 annot-version=v1.0 ATGCTTCCTCTGTTCTTCCTTACTTTCTCCTTCCTCTTCGCAGCTCTGCTCTTCAAAATCTTAACCGCTGAAGCGGATGTCACCTTGAGTTCGAAGGGAG GCGTCAATCGCCAAGTAATTGAAGACAAGGTTGTCTGGATAACGGGAGCTAGCCGCGGGATAGGTGAGATCCTGGCCAAACAATTTGCGAGTTTGGGTGC CAAACTTATTCTTTCCGCTAGAAATGAGGCTGAACTTGAGCGAGTTAAGAGCCAGCTTATAGGCAAGCATGCTCCCCATGATGTAAAGATTCTTCCATTG GATTTGGCATCTGGTGAAGCTTCTCTTAAGGAGGCTGTGGAGAAGGCAGAGGGATTTTTCCCTGGTTCTGGTGTTCATTATATGATTCACAATGCAGCTT ATGAACGCCCAAAATCGACAGCTTTGGAAGTAAATGAAGAAAGCCTCAAGATGACTTTCAACGTCAATGTTCTCGGGACAATATCCCTTACGCGGCTGCT AACTCCGTTTATGCTGAGCCGAGGTGGTGGCCATTTTGTTGTGATGAGCAGTGCTGCAGGTAAGACGCCCGCTCCAGGTCAGGCTGTATACTCTGCTTCC AAATTTGCATTGAATGGCTACTTCCATTCCTTGCGCTCTGAGCTCTACCCAAAAGGGATCAAGGTTACGGTTGTGTGTCCTGGGCCAATAGCGACAGATT CTGGATCGTCAGACTCGGAAAAGAAGAGGCGTTTGTCATCTGATAGATGTGCAGAGCTGACAATTATAGCTGCAAGCCACGGCCTGAAAGAAGTGTGGAT ATCAAATCAGCCTGTGTTAGCCGTTATGTACTTGGTGCAGTACATGCCAAGCATTGGCTGGTGGCTTATGGACAAGATTGGGGAGAAAAGGGTACAAGTC GCTAAGGAAAAGGGTGATACCTACTCACTAGGGTTGTTGTTCGGAAAGAAGAAGACAACCTGA
AA sequence Show only first row Show all	>Lus10026851 pacid=23142948 polypeptide=Lus10026851 locus=Lus10026851.g ID=Lus10026851.BGIv1.0 annot-version=v1.0 MLPLFFLTFSFLFAALLFKILTAEADVTLSSKGGVNRQVIEDKVVWITGASRGIGEILAKQFASLGAKLILSARNEAELERVKSQLIGKHAPHDVKILPL DLASGEASLKEAVEKAEGFFPGSGVHYMIHNAAYERPKSTALEVNEESLKMTFNVNVLGTISLTRLLTPFMLSRGGGHFVVMSSAAGKTPAPGQAVYSAS KFALNGYFHSLRSELYPKGIKVTVVCPGPIATDSGSSDSEKKRRLSSDRCAELTIIAASHGLKEVWISNQPVLAVMYLVQYMPSIGWWLMDKIGEKRVQV AKEKGDTYSLGLLFGKKKTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03330			NAD(P)-binding Rossmann-fold s...		Lus10026851 [exp]	0	1
AT3G11810			unknown protein		Lus10036797 [exp]	1.7	0.9139
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10010926 [exp]	4.5	0.8906
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10008582 [exp]	10.7	0.8877
AT5G62200			Embryo-specific protein 3, (AT...		Lus10027387 [exp]	13.0	0.8650
AT1G22540			Major facilitator superfamily ...		Lus10016932 [exp]	16.5	0.8765
AT1G61620			phosphoinositide binding (.1)		Lus10018409 [exp]	16.6	0.8793
AT3G11780			MD-2-related lipid recognition...		Lus10013366 [exp]	19.1	0.8696
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10005088 [exp]	21.2	0.8349
					Lus10035642 [exp]	22.0	0.8621
AT2G35330			RING/U-box superfamily protein...		Lus10004557 [exp]	24.5	0.8592

Compare expression of checked genes

Lus10026851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.