Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18070 166 / 2e-47 BGLU43 beta glucosidase 43 (.1.2) AT5G36890 162 / 2e-45 BGLU42 beta glucosidase 42 (.1.2) AT3G59810 144 / 6e-43 Small nuclear ribonucleoprotein family protein (.1) AT2G43810 140 / 2e-41 Small nuclear ribonucleoprotein family protein (.1.2) AT1G26560 139 / 4e-37 BGLU40 beta glucosidase 40 (.1) AT2G44450 134 / 5e-35 BGLU15 beta glucosidase 15 (.1) AT5G54570 128 / 7e-33 BGLU41 beta glucosidase 41 (.1) AT1G61820 123 / 3e-31 BGLU46 beta glucosidase 46 (.1.3) AT4G21760 119 / 6e-30 BGLU47 beta-glucosidase 47 (.1) AT3G18080 113 / 1e-27 BGLU44 B-S glucosidase 44 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020232 [exp] 309 / 6e-102 AT5G36890 699 / 0.0 beta glucosidase 42 (.1.2) Lus10037098 [exp] 168 / 9e-48 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10036885 [exp] 167 / 3e-47 AT1G26560 778 / 0.0 beta glucosidase 40 (.1) Lus10004654 [exp] 143 / 2e-38 AT1G26560 773 / 0.0 beta glucosidase 40 (.1) Lus10026657 [exp] 143 / 1e-37 AT1G26570 856 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10009644 [exp] 141 / 1e-37 AT3G18080 812 / 0.0 B-S glucosidase 44 (.1) Lus10007656 [exp] 124 / 2e-31 AT1G61820 637 / 0.0 beta glucosidase 46 (.1.3) Lus10009218 [exp] 125 / 4e-31 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10007655 [exp] 118 / 3e-29 AT1G61820 620 / 0.0 beta glucosidase 46 (.1.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G178800 [exp] 171 / 1e-48 AT5G36890 714 / 0.0 beta glucosidase 42 (.1.2) Potri.008G078400 [exp] 150 / 2e-45 AT2G43810 166 / 2e-55 Small nuclear ribonucleoprotein family protein (.1.2) Potri.010G178700 [exp] 149 / 5e-45 AT2G43810 150 / 4e-49 Small nuclear ribonucleoprotein family protein (.1.2) Potri.004G019700 [exp] 146 / 1e-39 AT1G61820 655 / 0.0 beta glucosidase 46 (.1.3) Potri.015G041300 [exp] 145 / 3e-39 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.004G019500 [exp] 145 / 4e-39 AT1G61820 657 / 0.0 beta glucosidase 46 (.1.3) Potri.012G049300 [exp] 143 / 2e-38 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.001G225808 [exp] 134 / 3e-35 AT3G60130 475 / 1e-163 beta glucosidase 16 (.1.2.3) Potri.001G226100 [exp] 134 / 4e-35 AT3G60130 476 / 6e-164 beta glucosidase 16 (.1.2.3) Potri.005G059500 [exp] 134 / 7e-35 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1 CL0527 [flax] [poplar] Sm-like PF01423 [flax] [poplar] LSM LSM domain
Representative CDS sequence Show only first row Show all	>Lus10026860 pacid=23142845 polypeptide=Lus10026860 locus=Lus10026860.g ID=Lus10026860.BGIv1.0 annot-version=v1.0 ATGAGTACGACAGAAGAGAAGGGGTCTTCAGCCACAAAGACGCCTGCTGATTTCCTGAAATCAATCCGAGGACGTCCAGTTGTCGTAAAGCTCAATTCCG GAGTTGATTATAGAGGGATCTTAGCTTGCCTGGATGGATATATGAATATTGCGATGGAGCAAACTGAGGAATATGTGAATGGACAACTGAAGAACAAATA TGGAGATGCTTTCATCCGAGGGAACAACGGTATTATATGTTACAATGAAACAAAGATTTACAACGAAGCGGACGCTCGCAGATGGTGCCTAGGAGCGGCA AATGCAGGGATGAATGTACGTGGGATTGAGGACGCTGAACACTTTTCGAAACTATCAACTGCAGTCTCTCCTGCCTCATTGGGAATGATGAAGGATGAAT TCCTCCACCACCATTTACCAAACACAGTCATCGACGACGATAAGGAACAAACAGTGTGCCGCACTCACTTCCCTCCCGATTTCCTCTTCGGAGTCGCCAC TTCTGCCTACCAGATTGAAGGTGGCGCCAATGCAGGCGGCAGGGGTCCTAGCATTTGGGATGCTTTCACCCACTCTCCTGGCACTGTTCTTGATGGATCA AATGGGGATGTCGCTGTAGATCATTACCATCGCTACAAGTATGGTAATCAAATGACTTTCAATAAGGTGGTACTGTTGGAAGTTGCACTAATGAAGTCCT TTGCCACCTACCCAGATACTTGCTTTGCAAGCTTCGGTGATAGAGTTAAGAATTGGATCACCATTAATGAGCCCCTCCAGACAGCAATTAATGGACATGA CTGCGGGATTTTTGCTCCTGGTAGACATGAACAGTCTGCTACTGAACCATATTTGGCTGCTCACCACCAGATCTTGGCTCATTTAGCGGCTGTTTCTGTA TATCGAAGCAAGTACAAGGAGAAGCAAAAAGGACAGATAGGTTTGGTGGTAGATTGTGAATGGGCGGAACCCAACTCAAACACTCCGGAAGACAAAGCTG CTGGAGCGAGACGCCTTGACTTTCATCTTGGATGGTACTAA
AA sequence Show only first row Show all	>Lus10026860 pacid=23142845 polypeptide=Lus10026860 locus=Lus10026860.g ID=Lus10026860.BGIv1.0 annot-version=v1.0 MSTTEEKGSSATKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNGIICYNETKIYNEADARRWCLGAA NAGMNVRGIEDAEHFSKLSTAVSPASLGMMKDEFLHHHLPNTVIDDDKEQTVCRTHFPPDFLFGVATSAYQIEGGANAGGRGPSIWDAFTHSPGTVLDGS NGDVAVDHYHRYKYGNQMTFNKVVLLEVALMKSFATYPDTCFASFGDRVKNWITINEPLQTAINGHDCGIFAPGRHEQSATEPYLAAHHQILAHLAAVSV YRSKYKEKQKGQIGLVVDCEWAEPNSNTPEDKAAGARRLDFHLGWY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10026860 [exp]	0	1
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10019024 [exp]	10.5	0.7632
AT5G59830			unknown protein		Lus10025307 [exp]	14.4	0.7624
AT2G29200		APUM1	pumilio 1 (.1)		Lus10002708 [exp]	36.9	0.7135
AT2G42810		AtPP5, PP5.2, P...	Arabidopsis thaliana protein p...		Lus10031381 [exp]	48.5	0.7270
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10005233 [exp]	58.3	0.7140
AT5G41770			crooked neck protein, putative...		Lus10041477 [exp]	65.1	0.7179
AT5G53060			RNA-binding KH domain-containi...		Lus10022390 [exp]	66.8	0.6624
AT1G74350			Intron maturase, type II famil...		Lus10017036 [exp]	74.6	0.7075
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030581 [exp]	79.9	0.6924
AT1G53720		ATCYP59, CYP59	cyclophilin 59 (.1)		Lus10031772 [exp]	91.9	0.7169

Compare expression of checked genes

Lus10026860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.