Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25090 155 / 4e-48 AtENODL13 early nodulin-like protein 13 (.1) AT2G25060 149 / 1e-45 AtENODL14 early nodulin-like protein 14 (.1) AT4G31840 140 / 4e-42 AtENODL15 early nodulin-like protein 15 (.1) AT5G57920 138 / 2e-41 AtENODL10 early nodulin-like protein 10 (.1) AT4G30590 136 / 2e-40 AtENODL12 early nodulin-like protein 12 (.1) AT2G23990 130 / 4e-38 AtENODL11 early nodulin-like protein 11 (.1.2) AT3G20570 116 / 2e-32 AtENODL9 early nodulin-like protein 9 (.1) AT5G53870 110 / 1e-28 AtENODL1 early nodulin-like protein 1 (.1) AT3G18590 102 / 4e-27 AtENODL5 early nodulin-like protein 5 (.1) AT1G48940 97 / 2e-25 AtENODL6 early nodulin-like protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003432 [exp] 238 / 2e-80 AT5G25090 167 / 5e-53 early nodulin-like protein 13 (.1) Lus10019955 [exp] 110 / 2e-30 AT4G30590 120 / 1e-34 early nodulin-like protein 12 (.1) Lus10043063 [exp] 108 / 2e-29 AT3G20570 153 / 4e-47 early nodulin-like protein 9 (.1) Lus10011158 [exp] 104 / 7e-28 AT3G20570 149 / 2e-45 early nodulin-like protein 9 (.1) Lus10036257 [exp] 101 / 3e-27 AT2G25060 110 / 3e-31 early nodulin-like protein 14 (.1) Lus10009617 [exp] 95 / 2e-24 AT3G18590 148 / 1e-45 early nodulin-like protein 5 (.1) Lus10032111 [exp] 91 / 4e-23 AT5G14345 147 / 1e-45 early nodulin-like protein 21 (.1) Lus10018617 [exp] 91 / 7e-23 AT4G28365 150 / 5e-46 early nodulin-like protein 3 (.1) Lus10039852 [exp] 89 / 3e-22 AT4G28365 150 / 8e-46 early nodulin-like protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G018200 [exp] 184 / 1e-59 AT2G25060 177 / 7e-57 early nodulin-like protein 14 (.1) Potri.006G264600 [exp] 181 / 2e-58 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.006G184100 [exp] 164 / 1e-51 AT4G31840 174 / 5e-56 early nodulin-like protein 15 (.1) Potri.001G419200 [exp] 107 / 6e-29 AT3G20570 153 / 1e-46 early nodulin-like protein 9 (.1) Potri.015G052000 [exp] 100 / 8e-27 AT1G48940 163 / 1e-51 early nodulin-like protein 6 (.1) Potri.011G117800 [exp] 103 / 1e-26 AT5G53870 158 / 3e-45 early nodulin-like protein 1 (.1) Potri.011G135400 [exp] 100 / 3e-26 AT3G20570 138 / 4e-41 early nodulin-like protein 9 (.1) Potri.001G398800 [exp] 100 / 5e-25 AT4G28365 145 / 9e-42 early nodulin-like protein 3 (.1) Potri.017G011200 [exp] 93 / 1e-23 AT4G32490 157 / 2e-48 early nodulin-like protein 4 (.1) Potri.001G338800 [exp] 88 / 7e-22 AT5G14345 145 / 6e-45 early nodulin-like protein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10026880 pacid=23142896 polypeptide=Lus10026880 locus=Lus10026880.g ID=Lus10026880.BGIv1.0 annot-version=v1.0 ATGGCGGCCTCTCACAGAGCTCTGCTTTCTTCTTCCAGCTGCTGCTGCCTCCTTATAATCCTATTCAGCTACTCCTCACAATTCGCCGCCGCCAAAGAGC TACTAGTGGGCGGGAAGACCGACGCCTGGACGGTTCCATCTTCCGAATCCGATTCCCTCAACAAATGGGCCCAAAACACCCGCTTCCGTATCGGCGACTC TCTCGTGTGGAAGTACGACGGTACAAAGGACTCGGTGATGCAAGTGAGCAGGAAAGCTTACCTGGGATGCAACACAACAGAGCCAATAGCGGAGTACAAA GACGGGGAAACCAAAGTGAAGCTGGACAGATCAGGTGCTTTCTACTTCATCAGTGGAGCCGAGGGACATTGCAAGCAAGGTCAGAAGGTCATCGTCGTTG TCTTGTCTTCCAGGAAGAAGAAGCCTGTTTCTTTTTCACCTGCTCCTGCTCCTTCTCCTTCTGATGCTATGGCTCCTGCTGTTGCTCCCGCCAGCGGCGG CGCTTCTTCAAGATTCGATCTTGCTGCTGTTAGTGCTCTGTTGTCGGGGTTGGGTCTTGTGGGTTTGCACTGGTTGCTGTTCTGA
AA sequence Show only first row Show all	>Lus10026880 pacid=23142896 polypeptide=Lus10026880 locus=Lus10026880.g ID=Lus10026880.BGIv1.0 annot-version=v1.0 MAASHRALLSSSSCCCLLIILFSYSSQFAAAKELLVGGKTDAWTVPSSESDSLNKWAQNTRFRIGDSLVWKYDGTKDSVMQVSRKAYLGCNTTEPIAEYK DGETKVKLDRSGAFYFISGAEGHCKQGQKVIVVVLSSRKKKPVSFSPAPAPSPSDAMAPAVAPASGGASSRFDLAAVSALLSGLGLVGLHWLLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10026880 [exp]	0	1
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10039168 [exp]	2.0	0.9575
AT1G16630			unknown protein		Lus10006845 [exp]	2.6	0.9724
AT4G14330			P-loop containing nucleoside t...		Lus10021167 [exp]	3.5	0.9624
AT1G11800			endonuclease/exonuclease/phosp...		Lus10020021 [exp]	3.7	0.9457
AT5G01910			unknown protein		Lus10022734 [exp]	4.6	0.9505
AT5G58930			Protein of unknown function (D...		Lus10018206 [exp]	5.1	0.9458
AT5G43020			Leucine-rich repeat protein ki...		Lus10024803 [exp]	5.5	0.9467
AT1G26760		SDG35, ATXR1	SET domain protein 35 (.1)		Lus10037155 [exp]	6.0	0.9586
AT2G23530			Zinc-finger domain of monoamin...		Lus10000845 [exp]	6.9	0.9521
AT3G54400			Eukaryotic aspartyl protease f...		Lus10024148 [exp]	8.1	0.9278

Compare expression of checked genes

Lus10026880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.