Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 389 / 2e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 381 / 1e-112 transmembrane receptors;ATP binding (.1.2) AT1G27180 377 / 3e-110 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 348 / 2e-101 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT2G14080 325 / 1e-93 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 309 / 2e-87 disease resistance protein (TIR-NBS-LRR class) (.1) AT1G63870 303 / 1e-86 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 298 / 1e-84 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 291 / 2e-83 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 292 / 6e-82 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020533 [exp] 1286 / 0 AT1G27170 405 / 1e-122 transmembrane receptors;ATP binding (.1.2) Lus10020524 [exp] 1281 / 0 AT1G27170 395 / 9e-119 transmembrane receptors;ATP binding (.1.2) Lus10020536 [exp] 1273 / 0 AT1G27170 392 / 8e-118 transmembrane receptors;ATP binding (.1.2) Lus10020537 [exp] 1231 / 0 AT1G27170 404 / 6e-121 transmembrane receptors;ATP binding (.1.2) Lus10005373 [exp] 1191 / 0 AT5G36930 404 / 8e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020534 [exp] 1146 / 0 AT5G36930 414 / 1e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10010574 [exp] 984 / 0 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10017143 [exp] 937 / 0 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10023272 [exp] 903 / 0 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G206400 [exp] 441 / 2e-138 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 436 / 3e-136 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 436 / 1e-134 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 436 / 3e-134 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 435 / 5e-134 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 433 / 2e-133 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 432 / 1e-132 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 432 / 1e-132 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G053200 [exp] 434 / 5e-132 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.019G017082 [exp] 425 / 5e-131 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10026961 pacid=23142881 polypeptide=Lus10026961 locus=Lus10026961.g ID=Lus10026961.BGIv1.0 annot-version=v1.0 ATGGCGGGATCTGAATCTCATAGCTCCTCCTTTGACCCAAAGCTACTCCTTCCAGTCGGAGAGTATGAGGTTTTCTTGAGCTTTAGAGGCTCAGATGTCC GACAAACTTTTGCTGATTGTCTGTATACCTGCTTAGTTCGCTCCAAAATTCGCACATTTAGAGACGAAGAAGAGCTCCGGAAGGGTGGAACCATTGGCCC TTCACTTGTCAAAGCTATCACTGAATCCAAGATTCACATCCCGATCTTAACGGAGAGTTACGCTTCAAGCAAATGGTGCCTCGAGGAGCTAGCTAAGATG GTGGATTGCTGGAAGACTGGGGGAGGGAATGGACGACACATCATCCTTCCCGTTTTCTATTTTATTGAACCTAGAGATGTGAGGCATCAAGACTTTGGTC CAAACAAGGAAGCATTTGAGCAACACAGCTCGAAACATGACCCACAAACCATATTGGAATGGAAGGAAGCTCTACATGAGGTTGGCAAGATGAAAGGATT GCATGTTACCAGATCGGACGGACAGGGGGCTCTAATAGACCAAATCTTTACTGAAGTCGAGCTACATTTGAGGGCTAATTATACATTAGTGACTGATGAA TTGGTGGGAATCAATTTCCATGTAGAAGAAGTTTCGAAATTAATGAATCTAGACTCTGCAAGTGAGAAAATTGTTGGCATTCATGGTATGGGAGGCATAG GTAAAACCACTCTAGCGAAGGCTGTATATAACAATGTTTGTATGCAGTTTGAGCGATGCTGCTTTGTGGAAAACATAAGAGCAACCTTATCTAAATCTGA TGGGACAATAATTCTACAAAATAAGATCATCTCTGACATTCTAAGGAATGATTCCATCAAAGCTAAAGATGGTAGTGATGGAATCCGATTGATTCGAGAG AGAGTTTGTAGACACAAACTTCTTATTGTCCTTGATGATATAGATGAGAGGTTCCAGTTTGACGACTTATTAGGGAAATTAGGCAACTTTTCCATGGATA GTCGATTTATTATCACAACTAGAGATACAAGAGTGTTGGAACTCCTTCAAGAGTGTAAGGTGTATGAGCTTGAAGAAATGAGTCATGATGACTCCCTCGA ACTTTTCAGCAAACATGCTCTAGGAGTGAATTATCCTTCAAAAGGTTATGCACATCTATCTAAGGAAATCGTACAAGTTGCAGCAGGGCTACCTTTAGCT CTGAAGGTTATAGGGTCACTTCTGTTTCGCACAGACAAAAGTTTTTGGGAAGAAAAGTTGATTGAATTGAAAAAAATATCTCCCACCAAAGTGCAAGAGA GATTGAAAATAAGTTACAATGAGTTGACTCACAATGAAAAACAAGTCTTTCTTGATGTTGCTTGTCTTTTTGTTGGTGCAAACAAAGAATCACCAATCTA TATGTGGAGTGATTGTGGTTATTATCCAGCAAGTACGATTAGGACTCTTGTTCAGAGGTCTCTATTGAGAATCAATGAGAATAGGCAATTATGGATGCAT GATCATATTAGAGACCTCGGAAGAGCCATTGTTAATGAAGAAAATAATCAGAATCCATACAAGCGCAGCAGGATATGGTCCAACAGGGATGCCATTAACC TTCTAAAAAATAGAGAGGGAACTGATTGCGTGGAAGCTCTAAGAGTTGATATGAAAGGTGAAGATTTCGTCCTCACAACCAAGGAATTTAAGCAATTGTC AAGATTAAGATATCTTGAACTGTGGAATGGAAGACTGGCTGGAAATTTCAAGGATATTCTTCCAAATATACGCTGGCTTAGATTATATGGCTGTAATTCA TTCCCCACCCTTCTTAACCTGAAGAAGTTGGTAGTTCTGGGTTTGGAGAATTGCTCGGTGAGAGATGGTTGGACAGGATGGAGTGAAATCAAGGTAGCAC GCAAGTTAAAAGTTCTGAATCTGATACGGTGCACTTACTTGGAAAAGATTCCAGACTTGTTTAATTGCAAATGTCTAGAGTTGTTAGATTTTTGTGGATG TCGGAAGATGCATGGTGTACTGGACATTGGAAACTTCAAGAATCTAAGACAGCTTGGGGTCAAGGGGACTCGAATAACTGATTTAAAAGGTGACCTCGGA AGGTTACAAAATCTCCAGAAGATTGACGTTAGTCACACAAGTTTGATCGAAATGCCTGTTGGATTTAGCAAGTTATCCTCTCTCGAAGTCTTGGACTTGA CATTACCTGATCGCAACAAGCCAGACTTAACAGAAATGCTTCCAGGTAGTTTAAAGAGCCTAGCCATCTCATCCTCTTCTCTTCCTGTCCTCCCATCATC TCTAAACTACTTGGACATTTGTTATTGCGAGCAGTTGCAAAGCCTGCCGAATCTCATGAATCTGACTAATCTGACTGGATTATGTCTGAAGGAGGTTGGG ATACGTGAGCTTCCTGGTTTGGGTGAGCTGAAACAGCTTGCAACTCTAACTATATGTAGAGCTTCAAATTTGGATAATTTGGATGGTCTTGAGAATCTCC TCCTTCTGAAAGAACTAAGTGTGCAACAGTGTGGAGTCCTGGAGAAACTACCCAGTCTAGCAAATTTGGCAAAGTTACATAAGCTAGAGATTGGATCGTG TCCGGTTCTCGCTGAAATCCATGGTTTGGGAGAACTGTGGGAGTCCTTATGGATATTGGATATAAGTGGGCGTGGGAGCTCTAGCTTAGCAGGTATAGAG GCACTTCACTCCTTGGTAAATTTGAAAACTCTGGTACTGCGAGGTCTCGAATTAACAAATATGTTGCCGCCTTCGCTATCCGTGTTCACCAAGCTGAGGA GGCTAACCATAGATCGGATGTCAGCGAGACAACTTCCGGACCTCTCTAGTCTCAAGAATCTGAGAGACTTGAGGATTATAAACTGCCCAGAGTTGATAGA GGTTACAGGGCTCGGAACCTTGGAGTGGTTAGAACGGCTAGTTATGAACATTTGCCGATCAATTAGGAAGTTACAGGATCTTTCTGGCCTTAAAAGGTTG AACTACTTGGATGTCACGGGATGCACAGAGTTGACCGCGGTCAGCGGGCTCGGAAGATTAGAAGCGTTGGAAACTTTGTATATGTCCTATTGTGAGTCGA TCAGGGAGTTGCCGAATCTATCAGGTCTTCAGAAATTGAGGAAATTACGTCTCAAGAAATGCAGACAACTGAAAGAGGTGAAAGGCCTTGAGAGATTGGA GTTGCTAGAAGTGTTTGAAATGGACAAGGAGTTGAACGTCAAATATGTATTGAAATCTGTTGCAAGATATGGTAAGCAATTATCAACAAGTGGGATAAAC TAA
AA sequence Show only first row Show all	>Lus10026961 pacid=23142881 polypeptide=Lus10026961 locus=Lus10026961.g ID=Lus10026961.BGIv1.0 annot-version=v1.0 MAGSESHSSSFDPKLLLPVGEYEVFLSFRGSDVRQTFADCLYTCLVRSKIRTFRDEEELRKGGTIGPSLVKAITESKIHIPILTESYASSKWCLEELAKM VDCWKTGGGNGRHIILPVFYFIEPRDVRHQDFGPNKEAFEQHSSKHDPQTILEWKEALHEVGKMKGLHVTRSDGQGALIDQIFTEVELHLRANYTLVTDE LVGINFHVEEVSKLMNLDSASEKIVGIHGMGGIGKTTLAKAVYNNVCMQFERCCFVENIRATLSKSDGTIILQNKIISDILRNDSIKAKDGSDGIRLIRE RVCRHKLLIVLDDIDERFQFDDLLGKLGNFSMDSRFIITTRDTRVLELLQECKVYELEEMSHDDSLELFSKHALGVNYPSKGYAHLSKEIVQVAAGLPLA LKVIGSLLFRTDKSFWEEKLIELKKISPTKVQERLKISYNELTHNEKQVFLDVACLFVGANKESPIYMWSDCGYYPASTIRTLVQRSLLRINENRQLWMH DHIRDLGRAIVNEENNQNPYKRSRIWSNRDAINLLKNREGTDCVEALRVDMKGEDFVLTTKEFKQLSRLRYLELWNGRLAGNFKDILPNIRWLRLYGCNS FPTLLNLKKLVVLGLENCSVRDGWTGWSEIKVARKLKVLNLIRCTYLEKIPDLFNCKCLELLDFCGCRKMHGVLDIGNFKNLRQLGVKGTRITDLKGDLG RLQNLQKIDVSHTSLIEMPVGFSKLSSLEVLDLTLPDRNKPDLTEMLPGSLKSLAISSSSLPVLPSSLNYLDICYCEQLQSLPNLMNLTNLTGLCLKEVG IRELPGLGELKQLATLTICRASNLDNLDGLENLLLLKELSVQQCGVLEKLPSLANLAKLHKLEIGSCPVLAEIHGLGELWESLWILDISGRGSSSLAGIE ALHSLVNLKTLVLRGLELTNMLPPSLSVFTKLRRLTIDRMSARQLPDLSSLKNLRDLRIINCPELIEVTGLGTLEWLERLVMNICRSIRKLQDLSGLKRL NYLDVTGCTELTAVSGLGRLEALETLYMSYCESIRELPNLSGLQKLRKLRLKKCRQLKEVKGLERLELLEVFEMDKELNVKYVLKSVARYGKQLSTSGIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10026961 [exp]	0	1
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10002545 [exp]	3.0	0.9173
AT1G33970			P-loop containing nucleoside t...		Lus10009482 [exp]	3.9	0.8622
AT1G67080		ABA4	abscisic acid (aba)-deficient ...		Lus10009168 [exp]	7.9	0.8389
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10042894 [exp]	10.0	0.8559
AT3G27050			unknown protein		Lus10032042 [exp]	10.2	0.8446
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10004239 [exp]	11.1	0.8788
AT1G26940			Cyclophilin-like peptidyl-prol...		Lus10036733 [exp]	16.1	0.7794
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10010068 [exp]	16.2	0.8554
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10015068 [exp]	17.9	0.8363
AT5G15430			Plant calmodulin-binding prote...		Lus10000209 [exp]	20.7	0.8618

Compare expression of checked genes

Lus10026961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.