Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13420 826 / 0 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT1G60160 721 / 0 Potassium transporter family protein (.1) AT2G35060 630 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 626 / 0 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT4G33530 624 / 0 KUP5 K+ uptake permease 5, K+ uptake permease 5 (.1) AT2G30070 623 / 0 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT1G70300 610 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT2G40540 593 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT5G14880 590 / 0 Potassium transporter family protein (.1) AT4G19960 590 / 0 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025493 [exp] 1469 / 0 AT4G13420 826 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10013304 [exp] 774 / 0 AT4G13420 950 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10012993 [exp] 680 / 0 AT1G60160 1237 / 0.0 Potassium transporter family protein (.1) Lus10018324 [exp] 652 / 0 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10030857 [exp] 631 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10036221 [exp] 623 / 0 AT2G35060 1173 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10030632 [exp] 621 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10003402 [exp] 620 / 0 AT5G09400 1296 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Lus10038361 [exp] 616 / 0 AT2G35060 1164 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G132500 [exp] 1148 / 0 AT4G13420 852 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G045200 [exp] 846 / 0 AT4G13420 978 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G069650 [exp] 845 / 0 AT4G13420 951 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G069799 [exp] 804 / 0 AT4G13420 845 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.010G094400 [exp] 720 / 0 AT1G60160 1209 / 0.0 Potassium transporter family protein (.1) Potri.001G123800 [exp] 644 / 0 AT2G35060 1149 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109700 [exp] 638 / 0 AT2G35060 1155 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.001G205500 [exp] 629 / 0 AT5G09400 1081 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Potri.003G023900 [exp] 628 / 0 AT5G09400 1120 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Potri.003G109800 [exp] 611 / 0 AT2G35060 985 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10027004 pacid=23151620 polypeptide=Lus10027004 locus=Lus10027004.g ID=Lus10027004.BGIv1.0 annot-version=v1.0 ATGGCTACTACCATGTCTGCCGATACCAGTACTCCAACTGTTGAGGACAACCGTAACAAAGGTGACGACGATGACCAAGTACTCTCTCCACAACTTGAAG GCAACAACGTCGCCGGAGTACCCGTCAAAAGCCTGCGACGGTTCGACTCCTTGGAGGTCGAATCTGGCAAGTTCGCCGGTCGTGGGAGCCACTGCGTTAA GGAAGCGAGCTGGGGAGTCCTACTTCAGCTGGCGTTCCAGAGCATCGGAGTGGTTTACGGGGACATAGGGACGTCGCCGTTGTACGTATACGCAAGCACT TTCGGGAACGGGATCAACCACGGAGAGGACGTACTGGGTGTTCTCTCTTTGATTATATACACCGTGACGTTGATCCCTCTTCTCAAGTACGTCTTCATCG TCTTGCGAGCCAACGACAATGGCGACGGTGGAACGTTTGCATTGTATTCGTTAATATGCCGATACGCGAGGGTGGGGCTGATTCCGAGCCAACAAGTGGA AGATGGCCAAGTGTCGAATTTTCAGTTGGAGTTGCCAAGCAAGCAATTAGAGAGGGGTTCCAGGTTGAAGTCAATGTTGGAAAAGAGTGTTTCTGCAAAG TATTTTCTACTTTTTGCGACCATGCTTGGTACCTCCATGGTTATTGGCGACGGCATTCTCACTCCTTGCATCTCCGTGCTATCTGCAGTGGGAGGGATGA AGGAGGCTACTGACTCTATGACTCAAGAGATGATCGTGTGGATATCAGTAGCTATTCTGATCATGTTGTTCGGAGTTCAGCGGTTCGGGACCGACAAAGT CGGCTACAGTTTCGCGCCGATTATCTGCGTCTGGTTCCTACTCATTGGTGGGATCGGATGCTACAATTTCGTCAAGTACGATCCGACGGTGCTGAAAGCC CTGAACCCCAAGTACATGATAGACTACTTCAACAGAAACAAAAAGGAAGCATGGATCTCACTAGGCGGAGTCGTCCTCGCCACCACAGGGACCGAAGCAC TGTTCGCTGATGTCGGCCACTTCACAGTTCGGTCCATTCAAATCAGCATGTGTTGCGTCACTTACCCCGCTCTCCTTCTTGCCTACACTGGCCAAGCTTC CTTCCTAACCAAACACCCTGACCTTGTCTCTGACACTTTCTACAAGTCCATACCAGGGGGTTTGTATTGGCCGATGTTCCTGGTAGCTGTTCTAGCATCG ATCATTGCGAGCCAGGCTATGATCTCCGGGACTTTCGCGATAATCCAACAGTCGCTCTCCCTTGGCTGCTTCCCTCGGGTGAAGATCGTGCACACTTCTT CTAAGTTTGCTGGACAGGTTTACATTCCGGAAGTCAATTACCTTCTGATGATGGCTTGTATTGGTGTCACCGTTGGGTTCCAAACTACTGCCAAGATCGG CAATGCCTACGGAATCGCCGTGGTGTTCGTTATGACTCTGACATCATCATTTCTGGTACTAATCATGCTAATGATATGGAACACCAACATACTATTGGTA ATTGGCTTTGTTCTAACAATCGGAAGTGTGGAGATTGTGTACCTAAGTTCAGTCCTTTACAAATTCAACCAAGGTGGGTACCTCCCGCTGGGATTCGCTG CAACACTAATGACCATCATGTATGTCTGGAACGATGTATACCGAAGGAAGTACTACTACGAGCTTGATCACAAGGTTTCTTCAGACAGTGTTAAGGACAT TGTAGCCGACACAGTACATCTGAGCAAACTTCCCGGACTAGCCCTCTTCTACTCCGAACTTGTCCAGGGCATCCCACCAATCTTCAGCCACTACTTAGCC AACATCCCTGCATTGCATTCACTACTAGTGTTCGTCTCCATCAAGTCCTTGCCCATTGGTAGGGTCCCCATTGAGGAGAGATTTCTTTTCCGCAGAGTAG AGCCCAAGGAGCTCAACATGTTTCGATGTGTAGCTAGATACGGATACACTGATGTTAGGAATCAGGGGGAGGAGTCGTTCGAGGGTGCGCTAGTTGAGAA GCTTAAGGAGTTCATCGTGGAGAGCTACTGGCTCTCGGAAACAAATGCGGGGAAAGCAGAAGGGCATCATGATCATGCCGAGGAGCTGGAGAAAGAGATG GAGATGGTTAACAAAGCATGGGAGTCCGGTGTTATTCACTTGATGGGTGAGAACGAGGTGATTGCGGGGAAAGGTACAGGGATAGTGAAGCGTGTTCTGA TCGATTATGCGTACAATTTCTTGAAGAAGAATGTGAGGCAGACAGAGAAGGTGTTTGATATCCCGCATAAGCGGATGCTCAAAGTTGGTATGACTTATGA GCTCTAG
AA sequence Show only first row Show all	>Lus10027004 pacid=23151620 polypeptide=Lus10027004 locus=Lus10027004.g ID=Lus10027004.BGIv1.0 annot-version=v1.0 MATTMSADTSTPTVEDNRNKGDDDDQVLSPQLEGNNVAGVPVKSLRRFDSLEVESGKFAGRGSHCVKEASWGVLLQLAFQSIGVVYGDIGTSPLYVYAST FGNGINHGEDVLGVLSLIIYTVTLIPLLKYVFIVLRANDNGDGGTFALYSLICRYARVGLIPSQQVEDGQVSNFQLELPSKQLERGSRLKSMLEKSVSAK YFLLFATMLGTSMVIGDGILTPCISVLSAVGGMKEATDSMTQEMIVWISVAILIMLFGVQRFGTDKVGYSFAPIICVWFLLIGGIGCYNFVKYDPTVLKA LNPKYMIDYFNRNKKEAWISLGGVVLATTGTEALFADVGHFTVRSIQISMCCVTYPALLLAYTGQASFLTKHPDLVSDTFYKSIPGGLYWPMFLVAVLAS IIASQAMISGTFAIIQQSLSLGCFPRVKIVHTSSKFAGQVYIPEVNYLLMMACIGVTVGFQTTAKIGNAYGIAVVFVMTLTSSFLVLIMLMIWNTNILLV IGFVLTIGSVEIVYLSSVLYKFNQGGYLPLGFAATLMTIMYVWNDVYRRKYYYELDHKVSSDSVKDIVADTVHLSKLPGLALFYSELVQGIPPIFSHYLA NIPALHSLLVFVSIKSLPIGRVPIEERFLFRRVEPKELNMFRCVARYGYTDVRNQGEESFEGALVEKLKEFIVESYWLSETNAGKAEGHHDHAEELEKEM EMVNKAWESGVIHLMGENEVIAGKGTGIVKRVLIDYAYNFLKKNVRQTEKVFDIPHKRMLKVGMTYEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10027004 [exp]	0	1
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10041719 [exp]	11.5	0.9042
AT5G03700			D-mannose binding lectin prote...		Lus10014371 [exp]	11.5	0.9079
AT2G39710			Eukaryotic aspartyl protease f...		Lus10004713 [exp]	11.8	0.8977
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10021321 [exp]	24.1	0.8914
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10008090 [exp]	27.0	0.8847
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Lus10012115 [exp]	30.2	0.8814
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	31.0	0.8876
AT1G66880			Protein kinase superfamily pro...		Lus10009150 [exp]	36.8	0.8254
AT3G47570			Leucine-rich repeat protein ki...		Lus10010199 [exp]	43.9	0.8719
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10014350 [exp]	44.0	0.8852

Compare expression of checked genes

Lus10027004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.