Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56110 223 / 1e-71 MYB MS188, ATMYB80, AtMYB103 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) AT3G28470 100 / 1e-24 MYB TDF1, ATMYB35 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) AT4G21440 100 / 2e-24 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G05100 99 / 8e-24 MYB ATMYB74 myb domain protein 74 (.1) AT4G28110 97 / 1e-23 MYB ATMYB41 myb domain protein 41 (.1) AT1G34670 97 / 9e-23 MYB ATMYB93 myb domain protein 93 (.1) AT5G15310 94 / 5e-22 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT4G17785 93 / 2e-21 MYB ATMYB39 myb domain protein 39 (.1) AT3G02940 92 / 2e-21 MYB ATMYB107 myb domain protein 107 (.1) AT5G16770 91 / 5e-21 MYB ATMYB9 myb domain protein 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008353 [exp] 481 / 2e-173 AT5G56110 224 / 4e-72 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) Lus10005834 [exp] 110 / 3e-28 AT3G28470 283 / 2e-94 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Lus10039462 [exp] 110 / 4e-28 AT3G28470 284 / 9e-95 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Lus10018525 [exp] 108 / 7e-28 AT4G21440 218 / 1e-69 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10031609 [exp] 105 / 3e-26 AT4G21440 171 / 4e-51 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10036660 [exp] 102 / 1e-24 AT3G28470 213 / 2e-66 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Lus10033119 [exp] 102 / 1e-24 AT3G28470 214 / 3e-67 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Lus10018418 [exp] 100 / 5e-24 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10039743 [exp] 95 / 6e-23 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G167600 [exp] 360 / 2e-125 AT5G56110 338 / 3e-116 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) Potri.001G470500 [exp] 342 / 5e-118 AT5G56110 334 / 2e-114 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) Potri.017G075000 [exp] 112 / 2e-28 AT3G28470 254 / 2e-82 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Potri.015G067700 [exp] 104 / 2e-25 AT3G28470 222 / 6e-70 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Potri.011G041600 [exp] 103 / 4e-25 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.004G033100 [exp] 103 / 5e-25 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.001G408700 [exp] 100 / 2e-24 AT4G21440 275 / 1e-90 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.019G118200 [exp] 100 / 4e-24 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.001G336700 [exp] 95 / 1e-22 AT5G14340 275 / 6e-93 myb domain protein 40 (.1) Potri.012G127700 [exp] 95 / 1e-22 AT4G22680 256 / 2e-85 myb domain protein 85 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10027110 pacid=23151508 polypeptide=Lus10027110 locus=Lus10027110.g ID=Lus10027110.BGIv1.0 annot-version=v1.0 ATGGGTAGGATACCTTGTTGTGAGAAGGACAATGTGAAAAGAGGGCAATGGACTCCTGAGGAAGACAACAAACTCTCTTCCTACATTTCCCAACATGGCA CCCGCAACTGGCGCCTCATCCCCAAGAATGCTGCGCAGCTACCAGGGCGCACGGACAACGACGTGAAGAATCACTGGAACACAAAGCTGAAGAAGAAGCT ATCTGGGATGGGAATAGACCCCGTGACGCACAAGCCCTTCTCCCACCTCATGGCGGAGATCGCCACCACGCTGGCTCCTCCGCAGGTCGCTCACCTGGCC GAAGCAGCTCTCGGATGCTTCAAGGACGAAATGCTGCACCTCCTCACTAAGAAGCGCATTGATTTCCAGCTCCAAAACCACTCATCCAACTCCAACCAAG GAGGAGGAGGAGGAGTCAACAACCTCCTTCATTCCTCCTCGATGCCTTCTTACATCGCGGCTGCAAAACACAAGGACAACGACGAAGACACGATCGAGAA AATCAAGCTGGGATTATCGAGGGCAATGCAGCAAGAACAACCTGATATGATGTTTCCCAACAAGAACTGGGACTCAAACAGCCAACCGGGGGCCGCACAT TTCTCCAACATGTTCCAATGTGGCCCTTCTTCCTTTGGGAATGAAGGTGCGGTTTCTCCATGGAGCCAGAGCATGTGCACGGGGAGCACCGGCGGGGATC AACAGGGACAGCTGCATGACAAGCTAGAAGAAGATGATGATGATAACGTGGAGGGTGAGTGTGAAGGTGGGAAAGAAGATGTCAGGAATAATGGATCTTC AAGCATCTTCAGCGCTGATTGTGTGCTCTGGGATTTACCTTCACATGACCTCATGAATACCATGGTTGAATAA
AA sequence Show only first row Show all	>Lus10027110 pacid=23151508 polypeptide=Lus10027110 locus=Lus10027110.g ID=Lus10027110.BGIv1.0 annot-version=v1.0 MGRIPCCEKDNVKRGQWTPEEDNKLSSYISQHGTRNWRLIPKNAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQVAHLA EAALGCFKDEMLHLLTKKRIDFQLQNHSSNSNQGGGGGVNNLLHSSSMPSYIAAAKHKDNDEDTIEKIKLGLSRAMQQEQPDMMFPNKNWDSNSQPGAAH FSNMFQCGPSSFGNEGAVSPWSQSMCTGSTGGDQQGQLHDKLEEDDDDNVEGECEGGKEDVRNNGSSSIFSADCVLWDLPSHDLMNTMVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56110	MYB	MS188, ATMYB80,...	MALE STERILE 188, ARABIDOPSIS ...		Lus10027110 [exp]	0	1
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10030439 [exp]	5.3	0.9663
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10015062 [exp]	5.8	0.9695
AT3G07310			Protein of unknown function (D...		Lus10002342 [exp]	10.8	0.9605
AT2G39200		ATMLO12, MLO12	MILDEW RESISTANCE LOCUS O 12, ...		Lus10023506 [exp]	12.7	0.9133
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10017981 [exp]	15.3	0.9634
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10041511 [exp]	18.4	0.9604
AT5G39650		DAU2	DUO1-activated unknown 2, Prot...		Lus10012821 [exp]	20.5	0.9491
AT5G51890			Peroxidase superfamily protein...		Lus10038054 [exp]	20.7	0.9399
AT1G70420			Protein of unknown function (D...		Lus10030612 [exp]	22.0	0.9554
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10022756 [exp]	24.8	0.9518

Compare expression of checked genes

Lus10027110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.