Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55580 287 / 1e-92 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT5G66770 188 / 2e-53 GRAS GRAS family transcription factor (.1) AT5G41920 177 / 6e-51 GRAS GRAS family transcription factor (.1) AT3G54220 181 / 2e-50 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT1G63100 176 / 6e-49 GRAS GRAS family transcription factor (.1) AT3G03450 170 / 4e-47 GRAS RGL2 RGA-like 2 (.1) AT5G17490 169 / 7e-47 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G50650 169 / 1e-46 GRAS SCL7 GRAS family transcription factor (.1) AT1G66350 160 / 6e-44 GRAS RGL1 RGA-like 1 (.1) AT1G14920 150 / 5e-40 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032882 [exp] 688 / 0 AT1G55580 294 / 2e-95 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Lus10041540 [exp] 204 / 6e-59 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 203 / 6e-58 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10006322 [exp] 194 / 4e-56 AT1G63100 588 / 0.0 GRAS family transcription factor (.1) Lus10029592 [exp] 189 / 4e-53 AT1G63100 669 / 0.0 GRAS family transcription factor (.1) Lus10041740 [exp] 181 / 1e-50 AT5G66770 631 / 0.0 GRAS family transcription factor (.1) Lus10024014 [exp] 179 / 5e-50 AT5G66770 590 / 0.0 GRAS family transcription factor (.1) Lus10003540 [exp] 168 / 1e-46 AT3G54220 423 / 1e-141 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10016496 [exp] 168 / 1e-45 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G020200 [exp] 371 / 8e-126 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.015G008300 [exp] 361 / 6e-122 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.001G473200 [exp] 358 / 8e-121 AT1G55580 405 / 4e-139 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.001G326000 [exp] 196 / 6e-56 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.003G122400 [exp] 185 / 6e-52 AT1G63100 696 / 0.0 GRAS family transcription factor (.1) Potri.006G114200 [exp] 186 / 8e-52 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.016G143833 [exp] 184 / 5e-51 AT3G54220 679 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.002G036100 [exp] 177 / 3e-50 AT3G54220 441 / 9e-149 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.001G109400 [exp] 178 / 2e-49 AT1G63100 711 / 0.0 GRAS family transcription factor (.1) Potri.007G026300 [exp] 172 / 1e-47 AT5G66770 589 / 0.0 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10027123 pacid=23151537 polypeptide=Lus10027123 locus=Lus10027123.g ID=Lus10027123.BGIv1.0 annot-version=v1.0 ATGCTGACCTCATTCAATAACTCGTCAGATGAGGACAACAATAACAACCAACAACCATCACCTTCCGCCGCCTTAGATCTACATTTCCACCTCACCACCG CCGCCCCGCCGCCACTACCACTGCTCCAACCGCCTTTCCCTCCTCCTCCTCCTCCTCCTGGACCGTCGTCCTCATCAACTTCATTCGTATCGTCACCGAT CCAAGTGAGGCAGCTAATAGTAAGATGCTCCGACCTCATTTCCCAAGCGGATTACTCCACCGCCCACTGCCTTATCGCCATCCTCTCTGCCGCCTCTTCC CCTTACGGCGACTCCACTCAACGCCTCGCCCACCACTTCTCCTCCGCCCTCTCCCTTCGCCTCTCCCGCCACCCCCGCCCCGCCGCCGTCGATCACCGCG ATGTCGCATCCGCCTACCTGACCTTGAACCAAATAACGCCCTTCATAAGGTTCACTCACCTCACTGCAAACCAAGCCATCTTGGAATCCGTACTGCTAGG GCAAAAACAACCCGATGATCAAGGGACGATCCACATCGTTGATTTTGACATAATGCACGGCGTCCAATGGCCGCCGTTGATGCAAGCCCTCGCCGAGCGC CACCCTCCCCCGAGCCTCCGGATCACTGGAACCGGACACGACCCCGAAACCCTAACCCGAACCGGCGACCGCCTCTCCAAGTTCGCCCAATCCTTGGGGC TTACATTCCAGTTCCACCCGCTCCTCTTCCACGCCTCCGCCGACCACCTCATACCATCGGCGGTGACCATCCTCCCGGGAGAAACCCTAGCAGTGAACTG CATGTTCTACCTACACCGACTAATCAACGACTTCCAGAACGACGACTACATGATAAGAACATTCTTGAGGAGGGTAAGAGAGATGAATCCGAGGGTGGTC ACGATCGGAGAGAGGGAAATGGACAGCGGCGGAGGCGTCGGCGAGGAGGTGGAGTATTACCAGAGGGTTTTTGAGTCGTTAGAAGAAACGGTGGCCCCCA CTAGTGTTGACAGGGCGGAGGTGGAAGGAGTGTGGTTTAGTAAGGAGATCAAAGAAGTTGTCAACGGCGGGAGGGTTGACCACAAGTTGAGGTGGTGGAG TGAGATGATGACAAGTGTCGGGTTTCGGAACGTCGGATTGAGTCCGTTTGCCGTTTCTCAGGCGAAGTTGCTGCTGAGGCTTCATTACCCTTCGGAAGGT TACCGTCTTGATCATGATGATGACGTAGAGGGCGTAGTTTCGGGGCTGTTCTTGGGCTGGAGAGATCGGCCGCTCTTCTCGCTCTCTTCGTGGCATGCTT GA
AA sequence Show only first row Show all	>Lus10027123 pacid=23151537 polypeptide=Lus10027123 locus=Lus10027123.g ID=Lus10027123.BGIv1.0 annot-version=v1.0 MLTSFNNSSDEDNNNNQQPSPSAALDLHFHLTTAAPPPLPLLQPPFPPPPPPPGPSSSSTSFVSSPIQVRQLIVRCSDLISQADYSTAHCLIAILSAASS PYGDSTQRLAHHFSSALSLRLSRHPRPAAVDHRDVASAYLTLNQITPFIRFTHLTANQAILESVLLGQKQPDDQGTIHIVDFDIMHGVQWPPLMQALAER HPPPSLRITGTGHDPETLTRTGDRLSKFAQSLGLTFQFHPLLFHASADHLIPSAVTILPGETLAVNCMFYLHRLINDFQNDDYMIRTFLRRVREMNPRVV TIGEREMDSGGGVGEEVEYYQRVFESLEETVAPTSVDRAEVEGVWFSKEIKEVVNGGRVDHKLRWWSEMMTSVGFRNVGLSPFAVSQAKLLLRLHYPSEG YRLDHDDDVEGVVSGLFLGWRDRPLFSLSSWHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10027123 [exp]	0	1
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10043291 [exp]	1.0	0.9956
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10035844 [exp]	2.0	0.9950
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10027398 [exp]	3.0	0.9939
AT5G01660			unknown protein		Lus10018307 [exp]	4.9	0.9909
					Lus10002045 [exp]	5.9	0.9864
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10031672 [exp]	6.0	0.9863
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018194 [exp]	6.5	0.9851
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10002046 [exp]	8.5	0.9851
AT2G40010			Ribosomal protein L10 family p...		Lus10028276 [exp]	8.5	0.9820
AT2G40010			Ribosomal protein L10 family p...		Lus10040214 [exp]	10.5	0.9775

Compare expression of checked genes

Lus10027123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.