Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23810 511 / 4e-179 AAP7 amino acid permease 7 (.1.2) AT5G09220 441 / 2e-151 AAP2 amino acid permease 2 (.1) AT5G63850 438 / 1e-150 AAP4 amino acid permease 4 (.1) AT1G77380 432 / 6e-148 AAP3, ATAAP3 amino acid permease 3 (.1) AT1G44100 427 / 4e-146 AAP5 amino acid permease 5 (.1) AT1G58360 423 / 2e-144 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT1G10010 419 / 4e-143 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G49630 410 / 1e-139 AAP6 amino acid permease 6 (.1) AT5G40780 137 / 2e-35 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 133 / 6e-34 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010580 [exp] 671 / 0 AT5G23810 547 / 0.0 amino acid permease 7 (.1.2) Lus10029702 [exp] 442 / 2e-151 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10029707 [exp] 437 / 1e-149 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 434 / 1e-148 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10042740 [exp] 433 / 4e-148 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 431 / 1e-147 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 424 / 7e-145 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 414 / 4e-141 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10037248 [exp] 408 / 1e-138 AT1G10010 563 / 0.0 amino acid permease 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G167000 [exp] 598 / 0 AT5G23810 573 / 0.0 amino acid permease 7 (.1.2) Potri.001G470000 [exp] 597 / 0 AT5G23810 570 / 0.0 amino acid permease 7 (.1.2) Potri.011G167200 [exp] 544 / 0 AT5G23810 518 / 0.0 amino acid permease 7 (.1.2) Potri.001G470200 [exp] 528 / 0 AT5G09220 543 / 0.0 amino acid permease 2 (.1) Potri.007G100100 [exp] 452 / 2e-155 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.005G068900 [exp] 451 / 2e-155 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.009G133600 [exp] 426 / 3e-145 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.002G079500 [exp] 424 / 5e-145 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 424 / 6e-145 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.011G167532 [exp] 427 / 2e-144 AT5G23810 396 / 1e-132 amino acid permease 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10027130 pacid=23151546 polypeptide=Lus10027130 locus=Lus10027130.g ID=Lus10027130.BGIv1.0 annot-version=v1.0 ATGGTTGCAACGGTGAGTGCCGGAGTAGGAGAAAAAGACTACTGCTCGCCGTTAGTATCTGAGTACCATCATCATCATCCTGATCCATCTTCTTCCCCAG AAGCGATCATTGATCCAATTGCCCACAAGCAATGCACTTATTCCGATGTCACCATCAACAGAACTGGGACGAGATGGACGGCTGTGGCGCATATAATAAC GGCAGTGATAGGAGCAGGAATTTTATCATTATCATGGACTTTTTCACAACTTGGTTGGATCGCCGGACCTCTCTCCATCATTGCCTTCGCCGTACTCACC TACCTCTCCTCTTCCATCCTCTCTGATTGTTACCGTTACCCTCACCCTGAACTCGGCCCCCACCGCCTCCGCTCCTACATGGACGCCGTCTACCTCTATC TCGGAGAAAGAAGCCACCAAATTGGGGGAGTAATGGTGCAGGCAAGCTTGCTAGAAACTGCAATTGCTTACACTGTCACCACCGCCAACAGCATCAGAGC CATTCAGAAATCAAACTGCTACCACAGTAGAGGTGGTGGCCAACTAGCTTCCTCCTGCAGCAACAGTAATGGTGACAACACCAATTTGCACATGCTCGTG TTCGGAGTGGTCCAAGTGGCTGTGTCTCAGATCCCAGATTTTCATAACATGGAATGGCTCTCAATCTTTTCTGCAGTCATGTCCTTTGCTTACTCCTTCA TTGGATTTGGACTTGGCTTTGCTCAAGTCATTGAGAACAGAGGGATTAAAGGAAGCATAAGTAAAGCCCCAGCTGGCAGCACTGCTGAGAAAACATGGCT AGTGTTTCAAGCTATTGGTGACATTGCATTTGCTTACCCCTACTCTCTTCTACTTCTCGAGATACAGGACACACTGAAATCGCCTCCAGCAGTGAACAAG ACAATGAAGAAGGCATCAGGGACTGCAATATCCATCACGACATCCTTCTTCCTGTTCTGTGCATGCTTAGGGTATGCTGCTTTCGGAGACGACACCCCCG GGAATCTCCTGACCGGTTCTAGATTCCACGACCCTTATCGACTCGTCGACTTTGCTAATGCTTGTGTCGTTCTCCATTTGGTTGGAGGTTATCAGATGTA CAGTCAGCCGGTGTATGCATTTGGGGAAGGATGGTTAACCCGGAAATTTCCAGAAAGCGGGCTAGTGAACAACAGCTACAAGCTGAGGTTATGCGGCGGG ACAAGGAAAGTGAGTGTATTAAGGTTGTGCTTCAGGACGGCATATGTGGCATCAACTACAGCTATAGCGATGATGTTTCCTTACTTCAACCAAGTGCTGG GAGTGCTTGGAGGGCTCTATTTTTGGCCTTTGGTCGTTCATTTCCCTGTGGAGATGTACTTGGTGCAGAGGAGACTTGGTGCTTGGACTACTGAATGGAT CCTTCTCAGGTCATTTAGCTTTGCTTGCTTGCTTGTTTCCTGCTTGGCCTTCATGGGTTCTGTTCAAGGCCTCTTCTCTGCCAAATTTGGCTGA
AA sequence Show only first row Show all	>Lus10027130 pacid=23151546 polypeptide=Lus10027130 locus=Lus10027130.g ID=Lus10027130.BGIv1.0 annot-version=v1.0 MVATVSAGVGEKDYCSPLVSEYHHHHPDPSSSPEAIIDPIAHKQCTYSDVTINRTGTRWTAVAHIITAVIGAGILSLSWTFSQLGWIAGPLSIIAFAVLT YLSSSILSDCYRYPHPELGPHRLRSYMDAVYLYLGERSHQIGGVMVQASLLETAIAYTVTTANSIRAIQKSNCYHSRGGGQLASSCSNSNGDNTNLHMLV FGVVQVAVSQIPDFHNMEWLSIFSAVMSFAYSFIGFGLGFAQVIENRGIKGSISKAPAGSTAEKTWLVFQAIGDIAFAYPYSLLLLEIQDTLKSPPAVNK TMKKASGTAISITTSFFLFCACLGYAAFGDDTPGNLLTGSRFHDPYRLVDFANACVVLHLVGGYQMYSQPVYAFGEGWLTRKFPESGLVNNSYKLRLCGG TRKVSVLRLCFRTAYVASTTAIAMMFPYFNQVLGVLGGLYFWPLVVHFPVEMYLVQRRLGAWTTEWILLRSFSFACLLVSCLAFMGSVQGLFSAKFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10027130 [exp]	0	1
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10014460 [exp]	3.9	0.8343
AT1G73210			Protein of unknown function (D...		Lus10038327 [exp]	4.9	0.7839
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10012556 [exp]	10.7	0.7728
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10035041 [exp]	14.5	0.7828
AT4G35750			SEC14 cytosolic factor family ...		Lus10028388 [exp]	15.7	0.7656
AT4G35750			SEC14 cytosolic factor family ...		Lus10041841 [exp]	21.1	0.7751
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10011373 [exp]	21.3	0.7806
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10000397 [exp]	27.5	0.7558
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Lus10002908 [exp]	29.8	0.7563
AT1G22170			Phosphoglycerate mutase family...		Lus10033465 [exp]	32.8	0.7541

Compare expression of checked genes

Lus10027130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.