Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32300 129 / 2e-36 UCC1 uclacyanin 1 (.1) AT5G07475 102 / 9e-27 Cupredoxin superfamily protein (.1) AT3G27200 100 / 4e-26 Cupredoxin superfamily protein (.1) AT3G60270 99 / 1e-25 Cupredoxin superfamily protein (.1) AT2G31050 91 / 1e-22 Cupredoxin superfamily protein (.1) AT2G26720 90 / 5e-22 Cupredoxin superfamily protein (.1) AT5G26330 86 / 2e-20 Cupredoxin superfamily protein (.1) AT2G44790 83 / 2e-19 UCC2 uclacyanin 2 (.1) AT1G72230 79 / 3e-18 Cupredoxin superfamily protein (.1) AT2G25060 78 / 9e-18 AtENODL14 early nodulin-like protein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039699 [exp] 113 / 3e-30 AT3G22060 171 / 5e-52 Receptor-like protein kinase-related family protein (.1) Lus10025580 [exp] 109 / 1e-29 AT1G72230 112 / 4e-31 Cupredoxin superfamily protein (.1) Lus10027043 [exp] 104 / 1e-27 AT1G72230 112 / 4e-31 Cupredoxin superfamily protein (.1) Lus10020944 [exp] 95 / 4e-24 AT1G72230 141 / 1e-42 Cupredoxin superfamily protein (.1) Lus10008720 [exp] 94 / 1e-23 AT1G72230 140 / 2e-42 Cupredoxin superfamily protein (.1) Lus10012085 [exp] 93 / 2e-23 AT5G07475 142 / 4e-43 Cupredoxin superfamily protein (.1) Lus10041211 [exp] 92 / 6e-23 AT5G26330 167 / 6e-53 Cupredoxin superfamily protein (.1) Lus10010533 [exp] 91 / 2e-22 AT5G26330 174 / 1e-55 Cupredoxin superfamily protein (.1) Lus10022350 [exp] 89 / 6e-22 AT3G27200 169 / 7e-54 Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G120200 [exp] 153 / 4e-46 AT2G32300 118 / 3e-32 uclacyanin 1 (.1) Potri.003G150300 [exp] 110 / 2e-30 AT5G07475 178 / 2e-57 Cupredoxin superfamily protein (.1) Potri.001G080700 [exp] 110 / 3e-30 AT5G07475 164 / 1e-51 Cupredoxin superfamily protein (.1) Potri.014G049600 [exp] 100 / 3e-26 AT3G60270 111 / 8e-31 Cupredoxin superfamily protein (.1) Potri.002G101300 [exp] 92 / 4e-23 AT1G72230 131 / 6e-39 Cupredoxin superfamily protein (.1) Potri.001G332200 [exp] 90 / 2e-22 AT3G27200 171 / 5e-55 Cupredoxin superfamily protein (.1) Potri.006G259000 [exp] 90 / 3e-22 AT5G26330 144 / 6e-44 Cupredoxin superfamily protein (.1) Potri.006G259101 [exp] 89 / 4e-22 AT5G26330 142 / 2e-43 Cupredoxin superfamily protein (.1) Potri.002G101200 [exp] 90 / 8e-22 AT1G72230 129 / 2e-37 Cupredoxin superfamily protein (.1) Potri.002G161300 [exp] 88 / 8e-22 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10027143 pacid=23145449 polypeptide=Lus10027143 locus=Lus10027143.g ID=Lus10027143.BGIv1.0 annot-version=v1.0 ATGATCGTGTCGGCGACAATATCAATGGCTCTCCTCAATTCATCAGCCATGGCCGCGAACTACATCGTCGGAGGCCCAAACGGCGGATGGGACGCCACCA CCGATCTCCAAACATGGGCCGCTTCCCAGTCTTTCCAACCCGGAGACAACCTCATTTTCCAGTACGCTCCAAGTCATGACGTGGTGGAAGTCCCGAAATC CGACTACGACGCCTGCCAGGCGACGACTCCGATTCAATCCTACACCGGCGGCGCTTCCATCGTTCCGATCACTTCCGCTGGAAAAAGGTACTTCATCTGC GGGACTCCTGGACATTGCAGTTCAGGGATGAAGCTCGAAGTCAACATTGTTTCAACCATTTCCCCTGCCTCCCCTGCCTCTGCGCCAGAGCAATCTCTAT CTCCTGCCTTGTCTCTGCCTTTCCCCACCGTTGAATCACCAGCGGCGGAATTTCCACCATCTTCAGTGTCTGCGTCGCCTCTTCCGTCGCCGGAGCTGGA AATTCCGGTTCTGGGAAGCTCTCCTGCATTGTCTCCGTTTCCGACGGGTACCTCTGCTCTGACTCCGCCGTCTGTGGATTCGTCGTCAGCTGAGGGAAAT GGGTTCGGCTCGATTCAGGGGATTGTCGTCGGATTGTGTTCGTTAGTAGCGGCTGTGATTGTGGTGATGGGTTGA
AA sequence Show only first row Show all	>Lus10027143 pacid=23145449 polypeptide=Lus10027143 locus=Lus10027143.g ID=Lus10027143.BGIv1.0 annot-version=v1.0 MIVSATISMALLNSSAMAANYIVGGPNGGWDATTDLQTWAASQSFQPGDNLIFQYAPSHDVVEVPKSDYDACQATTPIQSYTGGASIVPITSAGKRYFIC GTPGHCSSGMKLEVNIVSTISPASPASAPEQSLSPALSLPFPTVESPAAEFPPSSVSASPLPSPELEIPVLGSSPALSPFPTGTSALTPPSVDSSSAEGN GFGSIQGIVVGLCSLVAAVIVVMG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10027143 [exp]	0	1
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10039524 [exp]	1.7	0.9072
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10015375 [exp]	2.2	0.9229
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016212 [exp]	2.8	0.8980
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10004205 [exp]	3.7	0.9203
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10029235 [exp]	7.1	0.8570
AT1G19230			Riboflavin synthase-like super...		Lus10034890 [exp]	7.3	0.8885
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10004662 [exp]	8.5	0.8346
AT1G54120			unknown protein		Lus10008114 [exp]	8.9	0.8562
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10017558 [exp]	10.8	0.8332
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10002893 [exp]	15.0	0.8879

Compare expression of checked genes

Lus10027143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.