Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 228 / 3e-61 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 221 / 4e-59 transmembrane receptors;ATP binding (.1.2) AT5G51630 209 / 3e-55 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G46270 205 / 5e-54 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27180 206 / 6e-54 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G16890 205 / 7e-54 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G04220 202 / 1e-53 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G72890 193 / 2e-53 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) AT5G11250 202 / 5e-53 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G18360 200 / 9e-53 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007722 [exp] 575 / 0 AT5G36930 225 / 3e-60 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10033953 [exp] 488 / 3e-156 AT5G36930 347 / 2e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004747 [exp] 486 / 5e-154 AT5G36930 342 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012311 [exp] 483 / 7e-152 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10040576 [exp] 478 / 5e-150 AT1G27180 355 / 3e-103 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007829 [exp] 473 / 5e-149 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007821 [exp] 436 / 4e-135 AT5G36930 339 / 4e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007812 [exp] 431 / 5e-134 AT5G36930 359 / 4e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002247 [exp] 427 / 5e-134 AT5G36930 363 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G019710 [exp] 279 / 4e-83 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 281 / 2e-80 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 271 / 2e-80 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 284 / 4e-80 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002428 [exp] 271 / 4e-80 AT5G36930 387 / 2e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 280 / 7e-80 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002300 [exp] 280 / 5e-79 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 270 / 9e-79 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 279 / 1e-78 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 277 / 2e-78 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10027184 pacid=23145555 polypeptide=Lus10027184 locus=Lus10027184.g ID=Lus10027184.BGIv1.0 annot-version=v1.0 ATGCTTGGGAGGTCTCCGTGGAGGATTAGCAGTAACTGTCTCTTGATTACAATGAGTTCTGCTTCAAGCTCTAGAGATGCTACTTCATTACCCTCTCCAA AAGGGGAATATGAGGTGTTTTTAAGTTTCAGAGGTCCGGATTCTCGTCATAAGTTTACTGATGTTCTTAGTCGGTTCCTTATTCGCTCAAAAATCCGTAC ATATGTGGACGAGGACAGACTTGTTAAGGGAGAAGAAATATGGCCGAACTTAGTCAGAGCAATCCATCAGTCGAAAATTTCTATCCCTATTTTCTCGGAA GATTACGCCGGGAGCAAATGGTGCCTTAATGAATTGGTTGAAATGATTGAGCACCAAAAGCGAGAAAAGGGACACATCATAATTCCCGTCTTCTATAACG TAAAACCGAATGATGTACGCCATCAAACTGGCCCATACGAGGAACCATTTCGACAACATGAAAAGAAGCACGACAAGAAGACCATACAAAGTTGGAAAGA CGCTCTGGAACAGGTCGGATACTTAAAGGGATGGCCTATCAAAGAGGGAGAGATGGAGGGATCTACAGCAGATCTTATTACAGGGGAAGTATGGTCACAT CTACTCAAGCACAACGATGCATTAGAGACCGGGGAGTTGGTTGGAATCGATGATCATGTAGAAGAAGTAAAATGTAGGTTGAGTCTGGACTCTGATGGTG TATCGGTGGTTGGTCTCCATGGTATGGGTGGTATCGGTAAGACTACTATCGCAACGGCTGTATACAACGAGATATCAACTTGCTTTGAGCGTTATAGCTT CGTGGAAGATATACGCGAAACACAAAAACAAAGGAACGGTGTTCTCGCTATACAAAAGAAGTTAATTTCTAACATCTTAAGAACCAACTCGGAAACAATT GTCGATGTTTGTGAAGCAAAGAAGATCATAAAAGAGAGAATTTCACAGTTCAAAATCCTCGTGGTTCTTGATGATGTAGACGAGAATTTCAACTTCAAGA AACTCTTGGGCAATCTGGGAGATTTTGTTTCAGGAAGTCGGTTTATAATCACGTCTAGAAACATAAAAGTCTTGAAGAGGTTAAGCGAAGATCCAAACAA TTTGTATCAAGTTGAACCAATGGATCTCCATCACTCGCTTCAGTTATTTAGTGAACATGCATTCAAAAAGGATTCTCCTCCGCCGGGTTTCGAGGATACC AGCCAAGTGAAAGCCATTAGAGTAAACTCATCATCGAGCTCTCCTAGTTCCGAGTTTTGTAACGAATATTTTTCGTATTTACCGGAGTTGAGATATCTCG AGGCAAATTATACGACGTTGACTGGAGACTTCAGGAATCTTCTTCCAAGCTTAAAATGGCTTCGGTTGCGAGTCCCTTATCCGAGTATGGAGAATCATCA TGGTCCATGGAGAAGAAGTCGGAAGCTGAAGAATCTGCACATGAAAAATCTGATAATATTCGATGTCGCGAATAGCAAAGTAGGAGATGATTGGGGAGGT TGGAGCCACATCAAGGAGGCCAGAAAGCTGAAAGTTCTCAACCTTTCGAACTGCGATAATCTGCGAAAAGTACCTGAGCTTCCGGAATCAGGGAGTCTAG AGATGTTAGATCTTAGCAACAACTTCGCAAAGATGGATGAAGGAGCAGAGCTGAATCTCAGGAATCTTCAGAATCTGAAAGTAGCAAAACTTCAGTACTG CAAACTAGGAAAAATTAAAGGAGGAACAATCGGGACGAAAATGAAGGGGCTTCAAGAGCTCGATCTCACTCGAATCGAGGGCGACTTGGACAGCATGAGA CGAGCTATTTCCGATATTGGAAATCTGTCGTCTCTCAAAATCCTGAAAGTCAATGCAGCTTACAGGACAACAGGAACAGTTCATGGTTTGCTGGAAGGGA TTAAGCTACCAAAAGGGCTAAAAGTGTTGATCACCTCTTCCAGTGTTGCTAACCTCCATGAACTGGGGGAATTAGAGGAGCTGATGATGATTCAAAGCGA AACTGGTCTTTTGATTCCGAAACCGAGTAATGATCATAATGGGTGGTCATGGAGTTCATCATCCAAACTGAAGTCCTTAGTCCTGTCCAGTGCAGATATT GTTATGGCGAACAACAATTCGATCCTTCCATCAAATCTCACGCGTCTCTGCATTACCGATCTTATAAACTCGGAGCAGCTCCCGAACCTGAGCAACTTGG GGAGCTTGATCACGTTACAGCTCCAATTGTGTCCCGAGCTTCGAGAGATCCACGGATTCGAAGGGCTGAAATCGTTACAGAATCTTGAGATTCGTGGGAC CGGGAGCTTAACTCGTCTAGACGGGCTTGGGAATCTCATGTCTTGTTCAGATTGCAATTTGGAAAGCTTAAGGATACAAGGATGTCCTAAACTCTATACA ACATGGACATATGTTTATGATGATGACCTGGAGTTAACCAAGATCGAATCTTTAGAAGTAAAACCGGTAAAGATCGAATCTTTAGAAGAAAAACCGGTAA AGATCGAATCTTTACGAGAAATGTTCATCGATGGATGTCCAATGCTGGACGGTTGGGCGATTCCTCATCTGTCCAGGTTTCCAAACCTTAAGACGTTGCA CATTTCAGGAATCTCTGACCAGGAATCCTCCACATTGTTGCTTCTAGAAGGGGTGGAGGATATGGAAGAGTTAGTCCACCTAGAGCTGGGTGGTTTTGAT ACGGTGAAGAGACTACCTTCGATATCGAAGCTAAGCAAGTTGAGGCATTTGGCTCTGTGGGAGATTCCATGCTTGAAGGAGATTGAAGGACTTGGAGATT TGAAGTCGTTGAGAGTGTTGACGTTAGGTGGATGCACGTCGCTGGAAAGACTTCCTATCGCGAATCTATATACGAGCATGGATGATATGAAGCTGGACTT GCGAGGATGCACAAACTTTGCTGCGACTGATCTCTCTCCATTGATCGGGAGTCGATTCGAAGCAACCATCAACTGGCCACAGGAACATGTAGATCCCCAA CTGTAG
AA sequence Show only first row Show all	>Lus10027184 pacid=23145555 polypeptide=Lus10027184 locus=Lus10027184.g ID=Lus10027184.BGIv1.0 annot-version=v1.0 MLGRSPWRISSNCLLITMSSASSSRDATSLPSPKGEYEVFLSFRGPDSRHKFTDVLSRFLIRSKIRTYVDEDRLVKGEEIWPNLVRAIHQSKISIPIFSE DYAGSKWCLNELVEMIEHQKREKGHIIIPVFYNVKPNDVRHQTGPYEEPFRQHEKKHDKKTIQSWKDALEQVGYLKGWPIKEGEMEGSTADLITGEVWSH LLKHNDALETGELVGIDDHVEEVKCRLSLDSDGVSVVGLHGMGGIGKTTIATAVYNEISTCFERYSFVEDIRETQKQRNGVLAIQKKLISNILRTNSETI VDVCEAKKIIKERISQFKILVVLDDVDENFNFKKLLGNLGDFVSGSRFIITSRNIKVLKRLSEDPNNLYQVEPMDLHHSLQLFSEHAFKKDSPPPGFEDT SQVKAIRVNSSSSSPSSEFCNEYFSYLPELRYLEANYTTLTGDFRNLLPSLKWLRLRVPYPSMENHHGPWRRSRKLKNLHMKNLIIFDVANSKVGDDWGG WSHIKEARKLKVLNLSNCDNLRKVPELPESGSLEMLDLSNNFAKMDEGAELNLRNLQNLKVAKLQYCKLGKIKGGTIGTKMKGLQELDLTRIEGDLDSMR RAISDIGNLSSLKILKVNAAYRTTGTVHGLLEGIKLPKGLKVLITSSSVANLHELGELEELMMIQSETGLLIPKPSNDHNGWSWSSSSKLKSLVLSSADI VMANNNSILPSNLTRLCITDLINSEQLPNLSNLGSLITLQLQLCPELREIHGFEGLKSLQNLEIRGTGSLTRLDGLGNLMSCSDCNLESLRIQGCPKLYT TWTYVYDDDLELTKIESLEVKPVKIESLEEKPVKIESLREMFIDGCPMLDGWAIPHLSRFPNLKTLHISGISDQESSTLLLLEGVEDMEELVHLELGGFD TVKRLPSISKLSKLRHLALWEIPCLKEIEGLGDLKSLRVLTLGGCTSLERLPIANLYTSMDDMKLDLRGCTNFAATDLSPLIGSRFEATINWPQEHVDPQ L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10027184 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10007811 [exp]	1.0	0.9746
AT5G36930			Disease resistance protein (TI...		Lus10007790 [exp]	1.4	0.9729
AT1G27180			disease resistance protein (TI...		Lus10004727 [exp]	2.4	0.9389
AT5G36930			Disease resistance protein (TI...		Lus10000331 [exp]	3.9	0.9446
AT5G36930			Disease resistance protein (TI...		Lus10008526 [exp]	5.0	0.9400
AT5G36930			Disease resistance protein (TI...		Lus10033953 [exp]	6.0	0.9412
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10038242 [exp]	6.0	0.9198
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10041979 [exp]	8.4	0.9373
AT5G17680			disease resistance protein (TI...		Lus10014829 [exp]	9.4	0.9205
AT5G36930			Disease resistance protein (TI...		Lus10007808 [exp]	9.5	0.9250

Compare expression of checked genes

Lus10027184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.