Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32460 240 / 1e-72 MYB ATMYB101, AtM1 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) AT4G26930 210 / 2e-62 MYB ATMYB97 myb domain protein 97 (.1) AT5G55020 211 / 4e-61 MYB ATMYB120 myb domain protein 120 (.1) AT5G06100 207 / 1e-60 MYB ATMYB33 myb domain protein 33 (.1.2.3) AT3G11440 208 / 4e-60 MYB AtMYB65 myb domain protein 65 (.1) AT2G26960 191 / 1e-54 MYB ATMYB81 myb domain protein 81 (.1) AT4G28110 158 / 3e-44 MYB ATMYB41 myb domain protein 41 (.1) AT4G21440 159 / 6e-44 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G13480 157 / 7e-44 MYB ATMYB79 myb domain protein 79 (.1) AT5G10280 159 / 9e-44 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035275 [exp] 859 / 0 AT2G32460 233 / 5e-70 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10026787 [exp] 218 / 2e-64 AT3G11440 301 / 4e-96 myb domain protein 65 (.1) Lus10036103 [exp] 217 / 5e-64 AT3G11440 307 / 1e-98 myb domain protein 65 (.1) Lus10040063 [exp] 213 / 1e-62 AT2G32460 229 / 1e-69 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10008685 [exp] 217 / 4e-62 AT3G11440 357 / 3e-115 myb domain protein 65 (.1) Lus10026142 [exp] 221 / 9e-62 AT3G11440 370 / 5e-115 myb domain protein 65 (.1) Lus10021539 [exp] 213 / 3e-61 AT2G32460 226 / 5e-67 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10033889 [exp] 161 / 6e-45 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10005079 [exp] 157 / 2e-44 AT3G30210 199 / 1e-63 myb domain protein 121 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G228700 [exp] 300 / 2e-95 AT2G32460 234 / 6e-71 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Potri.003G189700 [exp] 225 / 4e-66 AT5G06100 410 / 8e-138 myb domain protein 33 (.1.2.3) Potri.001G036000 [exp] 219 / 9e-64 AT5G06100 402 / 1e-134 myb domain protein 33 (.1.2.3) Potri.001G224500 [exp] 213 / 5e-62 AT3G11440 298 / 1e-94 myb domain protein 65 (.1) Potri.009G018700 [exp] 212 / 1e-61 AT5G06100 286 / 1e-90 myb domain protein 33 (.1.2.3) Potri.013G130900 [exp] 194 / 7e-54 AT5G06100 177 / 1e-48 myb domain protein 33 (.1.2.3) Potri.010G064000 [exp] 160 / 2e-45 AT3G24310 255 / 4e-85 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.012G140700 [exp] 162 / 3e-45 AT3G61250 276 / 1e-92 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.011G125900 [exp] 160 / 4e-44 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.002G173900 [exp] 158 / 5e-44 AT3G13540 207 / 4e-66 myb domain protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10027189 pacid=23145505 polypeptide=Lus10027189 locus=Lus10027189.g ID=Lus10027189.BGIv1.0 annot-version=v1.0 ATGATGCGGAACGATGTTGTGGAGCACGGTGACGAGGGTGGAGGAGGAGCAGGAGGAGCAGCGACGATGGTGGTGATGACCGGTGGCGGTGGTGGGCAGA GGAAGGGGAATTTGCAGGGGCTGAAGAAAGGGCCGTGGACGGCGGCGGAGGACGCGATTCTGACGGAGTATGTGAGGAGGCACGGTGAAGGGAATTGGAA TTCCGTGCAGAAGAATTGTGGGTTGATGCGTTGTGGGAAGAGCTGCCGTCTTCGGTGGGCGAATCATCTCCGGCCGAATTTGAAGAAGGGGGCGTTCACT CCGGATGAGGAGCGTGTGATCATTGAGCTACATTCCAAGTATGGCAACAAATGGGCTCGCATGGCCACCCAGTTACCGGGAAGGACGGATAACGAGATAA AGAATTACTGGAACACAAGGATGAAGCGACGGCAAAGGGCTGGACTGCCGATGTACCCACGGGAGTTCTTGGACCAGACGGCGTCATTTCACATGCAGCA ACGGCAGCAGCAAGAACATAATTTCATCGACCATAACAATAATATCAAACCGTCGTCGTCTCTCTTCTCGATGTTCCGTAAGGCGCCGGCGCCGGATTAC AACCCTTGTAATTTTTCCATCTCCGCCGAAAAGCTGACGGATTTCTCGTCCTCTGCTCCCGGAACCGGCGAGTCTTACCAAGGGCATAATAGTCATCACA GCAATCTCATCTGCGCCACTAATCACCACCAACACCAACAATACATAAACGCTCAGAACGGCGTCGTTTTGGGTCCTCTTTCACTTTCCCCTCCTGTGGT TTCCGGATTTGCCCCTCCCCAACAGTTGATAGTTTTCGGTCAGAGCTCTACCTCTCCGGCGATTGATCAACTTCACGGCGGAGGTGGCGGCGGAGGTGGA GGTGGAGGAGGAGAGAGTTACCCCAACAATGTGATTAGCTTCACGTCGTTGATCATGGGAGATTACGAAGATCACGACGTTGATCAGCTGGAATCGTTCA GCTTCGCCTCCGCTTCAGAGCTCCCTTCACTCCAAACACCTCCGCGGTCCGCCTCTTCGAATGCCGCCACCAGCGGCGTCGGCAGTGGAGTTTGCATCAC GGTGGAGGAACCCGACAACGCCAATAGCAAGAACAACAACAACAACAACAACGGCAGTGAGGTAGTCCGTGACGGAAATGACGATATTAGCCATGAGGAC AGTGTCCTGATCGGGGATAATATGGTAATCAGGGACAACAACAGTGGAATGCTTGACGTGTTGCTGCAGGAGAGCAAGTCTATTATGTGCCGGAAGAGGA AAGCGGATGACCGTGAGATCTCATCGCCGGCGGGTGAGGATGAAGGAAAGCGTCTCTGTAATCCGGCGATGTTTCGCATCGCCGCCGGGAGCAACGAACA GCTGGCATCTGATGGTGGTCGGTGGGACCCACGGGATAACTTTATGTCATCACTTGGAATGGAGCCGGTGAAGGAGAAGGCGACGGTGATGGCGCCAGAG GAAATGAGTTCGACGACCATGGTTGACGACGATGACTTGCTGAGCTTACTCACCAACTTCCCTTCTTCCGTACCTCTACCGGAGTGGTACCACGGTCATC ACCACAACACGGCCAACAACTATAATAATGGCAATGCCTATGAGATCTCCGGCAACGGTGGTGGTTTGGGTGATCATCAGGTGTGA
AA sequence Show only first row Show all	>Lus10027189 pacid=23145505 polypeptide=Lus10027189 locus=Lus10027189.g ID=Lus10027189.BGIv1.0 annot-version=v1.0 MMRNDVVEHGDEGGGGAGGAATMVVMTGGGGGQRKGNLQGLKKGPWTAAEDAILTEYVRRHGEGNWNSVQKNCGLMRCGKSCRLRWANHLRPNLKKGAFT PDEERVIIELHSKYGNKWARMATQLPGRTDNEIKNYWNTRMKRRQRAGLPMYPREFLDQTASFHMQQRQQQEHNFIDHNNNIKPSSSLFSMFRKAPAPDY NPCNFSISAEKLTDFSSSAPGTGESYQGHNSHHSNLICATNHHQHQQYINAQNGVVLGPLSLSPPVVSGFAPPQQLIVFGQSSTSPAIDQLHGGGGGGGG GGGGESYPNNVISFTSLIMGDYEDHDVDQLESFSFASASELPSLQTPPRSASSNAATSGVGSGVCITVEEPDNANSKNNNNNNNGSEVVRDGNDDISHED SVLIGDNMVIRDNNSGMLDVLLQESKSIMCRKRKADDREISSPAGEDEGKRLCNPAMFRIAAGSNEQLASDGGRWDPRDNFMSSLGMEPVKEKATVMAPE EMSSTTMVDDDDLLSLLTNFPSSVPLPEWYHGHHHNTANNYNNGNAYEISGNGGGLGDHQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Lus10027189 [exp]	0	1
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024062 [exp]	4.9	0.6549
AT5G61350			Protein kinase superfamily pro...		Lus10021632 [exp]	13.4	0.7025
AT1G12330			unknown protein		Lus10028918 [exp]	17.9	0.7019
					Lus10032027 [exp]	25.9	0.5271
AT5G66310			ATP binding microtubule motor ...		Lus10014268 [exp]	26.5	0.6888
AT3G29180			Protein of unknown function (D...		Lus10037132 [exp]	28.1	0.6491
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10037965 [exp]	31.0	0.6442
AT2G37370			unknown protein		Lus10009063 [exp]	32.6	0.6450
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10035485 [exp]	34.9	0.6023
AT5G40900			Nucleotide-diphospho-sugar tra...		Lus10032050 [exp]	47.4	0.6247

Compare expression of checked genes

Lus10027189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.