Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66230 247 / 2e-82 MYB ATMYB20 myb domain protein 20 (.1) AT4G12350 246 / 7e-82 MYB ATMYB42 myb domain protein 42 (.1) AT4G22680 244 / 2e-81 MYB ATMYB85 myb domain protein 85 (.1) AT5G16600 239 / 2e-78 MYB ATMYB43 myb domain protein 43 (.1) AT5G62320 214 / 9e-70 MYB ATMYB99, AtMYBCU15 myb domain protein 99 (.1) AT3G02940 213 / 3e-68 MYB ATMYB107 myb domain protein 107 (.1) AT5G15310 211 / 2e-67 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT5G16770 210 / 4e-67 MYB ATMYB9 myb domain protein 9 (.1.2) AT4G28110 209 / 4e-67 MYB ATMYB41 myb domain protein 41 (.1) AT5G14340 207 / 1e-66 MYB AtMYB40 myb domain protein 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038913 [exp] 407 / 6e-146 AT1G66230 247 / 3e-82 myb domain protein 20 (.1) Lus10032226 [exp] 262 / 6e-88 AT4G12350 295 / 7e-100 myb domain protein 42 (.1) Lus10024589 [exp] 259 / 1e-86 AT4G12350 298 / 6e-101 myb domain protein 42 (.1) Lus10004043 [exp] 248 / 1e-81 AT1G66230 264 / 4e-87 myb domain protein 20 (.1) Lus10002296 [exp] 248 / 2e-81 AT1G66230 263 / 1e-86 myb domain protein 20 (.1) Lus10004042 [exp] 228 / 7e-74 AT1G66230 251 / 2e-81 myb domain protein 20 (.1) Lus10032117 [exp] 213 / 1e-68 AT5G14340 244 / 9e-81 myb domain protein 40 (.1) Lus10010974 [exp] 208 / 5e-68 AT5G16600 215 / 8e-70 myb domain protein 43 (.1) Lus10014569 [exp] 209 / 2e-67 AT5G14340 239 / 7e-79 myb domain protein 40 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G127700 [exp] 257 / 2e-86 AT4G22680 256 / 2e-85 myb domain protein 85 (.1) Potri.003G114100 [exp] 256 / 5e-86 AT4G12350 300 / 1e-102 myb domain protein 42 (.1) Potri.015G129100 [exp] 256 / 7e-86 AT4G22680 249 / 1e-82 myb domain protein 85 (.1) Potri.001G118800 [exp] 255 / 1e-85 AT4G12350 303 / 1e-103 myb domain protein 42 (.1) Potri.004G086300 [exp] 244 / 9e-81 AT5G16600 284 / 7e-95 myb domain protein 43 (.1) Potri.017G130300 [exp] 241 / 3e-79 AT5G16600 280 / 2e-93 myb domain protein 43 (.1) Potri.001G336700 [exp] 218 / 1e-70 AT5G14340 275 / 6e-93 myb domain protein 40 (.1) Potri.007G093900 [exp] 213 / 5e-68 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.002G096800 [exp] 212 / 6e-68 AT1G34670 305 / 2e-102 myb domain protein 93 (.1) Potri.005G074500 [exp] 212 / 9e-68 AT1G34670 290 / 1e-96 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10027197 pacid=23145569 polypeptide=Lus10027197 locus=Lus10027197.g ID=Lus10027197.BGIv1.0 annot-version=v1.0 ATGGGCAGGCAGCCTTGTTGCGACAAGCTAGGAGTGAAGAAGGGACCGTGGACGGCGGAGGAAGACCGCAAGTTGGTCAACTTCATAGTAACCCACGGCC AATGCTGCTGGCGCGCCGTACCCAAGCTCGCCGGACTACGCCGCTGCGGGAAGAGCTGCCGCCTCCGGTGGACTAACTACCTCCGCCCTGACTTGAAACG CGGCGTTTTGAACGAGTCCGAGGAACGCATCGTCATCGATCTTCACTCCCGTCTCGGGAATCGATGGTCTAAGATTGCGGCCGAATTGCCAGGAAGAACA GACAACGAAATCAAAAATCATTGGAACACTCATATCAAGAAGAAGTTAATCAAGATGGGCATTGATCCCGTCACTCACAAGCCTCTTGATGACAAAGCTA AGGAAACTACGGCGTATGATGTTGATCATCATGGGCCACAGAGAGATAGTTGCATCAGCGACAATGATTCTTTTGATGAATTTCGACAGTTTGAGTCAAA ATCGATGAGTACTCTTAGTTGGTCCTCAGAACTACTCTCAGTGGACGACCACATTGACTCCACATGGCGACCGTGGTCGGACACAGAGTTCAAGAAGGAG CTTGGATCGGTTGGTGATCATCATCTTGATGATCATCACTTTAGTCTCTTAAATGGGTTCAATGGCTTTGGTGAGATCGACTTGTTATCCGACATGAATG AACATATTAGCTAG
AA sequence Show only first row Show all	>Lus10027197 pacid=23145569 polypeptide=Lus10027197 locus=Lus10027197.g ID=Lus10027197.BGIv1.0 annot-version=v1.0 MGRQPCCDKLGVKKGPWTAEEDRKLVNFIVTHGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGVLNESEERIVIDLHSRLGNRWSKIAAELPGRT DNEIKNHWNTHIKKKLIKMGIDPVTHKPLDDKAKETTAYDVDHHGPQRDSCISDNDSFDEFRQFESKSMSTLSWSSELLSVDDHIDSTWRPWSDTEFKKE LGSVGDHHLDDHHFSLLNGFNGFGEIDLLSDMNEHIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10027197 [exp]	0	1
AT1G35830			VQ motif-containing protein (....		Lus10024738 [exp]	3.2	0.8866
AT1G22170			Phosphoglycerate mutase family...		Lus10033465 [exp]	3.7	0.8681
AT4G27270			Quinone reductase family prote...		Lus10020076 [exp]	4.0	0.8681
AT5G46600			Aluminium activated malate tra...		Lus10042571 [exp]	7.3	0.8680
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011403 [exp]	8.0	0.8542
AT1G60750			NAD(P)-linked oxidoreductase s...		Lus10041185 [exp]	8.2	0.8327
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10008786 [exp]	11.3	0.8748
AT2G45210			SAUR-like auxin-responsive pro...		Lus10001985 [exp]	12.0	0.8406
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10016411 [exp]	14.5	0.8424
AT1G31130			unknown protein		Lus10028643 [exp]	15.0	0.8809

Compare expression of checked genes

Lus10027197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.