Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51480 821 / 0 SKS2 SKU5 similar 2 (.1) AT4G25240 813 / 0 SKS1 SKU5 similar 1 (.1) AT4G12420 770 / 0 SKU5 Cupredoxin superfamily protein (.1.2) AT5G48450 627 / 0 SKS3 SKU5 similar 3 (.1) AT4G22010 497 / 3e-171 SKS4 SKU5 similar 4 (.1) AT1G21860 493 / 2e-169 SKS7 SKU5 similar 7 (.1) AT1G21850 492 / 6e-169 SKS8 SKU5 similar 8 (.1) AT1G76160 489 / 5e-168 SKS5 SKU5 similar 5 (.1) AT1G55570 481 / 2e-164 SKS12 SKU5 similar 12 (.1) AT1G41830 476 / 1e-162 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038920 [exp] 1086 / 0 AT5G51480 851 / 0.0 SKU5 similar 2 (.1) Lus10031143 [exp] 917 / 0 AT4G25240 898 / 0.0 SKU5 similar 1 (.1) Lus10031722 [exp] 910 / 0 AT4G25240 897 / 0.0 SKU5 similar 1 (.1) Lus10028921 [exp] 767 / 0 AT4G12420 975 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10004339 [exp] 764 / 0 AT4G12420 979 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10032241 [exp] 756 / 0 AT4G12420 950 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10024604 [exp] 748 / 0 AT4G12420 941 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10025860 [exp] 668 / 0 AT5G48450 882 / 0.0 SKU5 similar 3 (.1) Lus10038239 [exp] 658 / 0 AT5G48450 858 / 0.0 SKU5 similar 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G127200 [exp] 855 / 0 AT4G25240 882 / 0.0 SKU5 similar 1 (.1) Potri.012G126400 [exp] 852 / 0 AT4G25240 883 / 0.0 SKU5 similar 1 (.1) Potri.003G112700 [exp] 785 / 0 AT4G12420 932 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.001G120300 [exp] 783 / 0 AT4G12420 930 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.014G177700 [exp] 654 / 0 AT5G48450 885 / 0.0 SKU5 similar 3 (.1) Potri.002G021000 [exp] 513 / 2e-177 AT1G75790 670 / 0.0 SKU5 similar 18 (.1) Potri.002G227600 [exp] 513 / 3e-177 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 506 / 8e-175 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.005G247700 [exp] 505 / 4e-174 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.004G180500 [exp] 502 / 6e-173 AT1G76160 880 / 0.0 SKU5 similar 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10027207 pacid=23145490 polypeptide=Lus10027207 locus=Lus10027207.g ID=Lus10027207.BGIv1.0 annot-version=v1.0 ATGGCTCAGATTCTTCTTCTTCTTCTCCAATTCTTATCACTCAGCATTGCTCTGTTTTCGGAGATCCCCTGTAGTTTGGCGGCTGACCCCACCGTCTCTT ACGACTTCAAGGTCTCTTACATCACCGCCTCCCCTCTCGGCGTTCCTCAACAGGTGATTGCGGTGAACGGAGAGTTTCCTGGACAGGTGATCAACGCAAC GACGAACTACAATGTGGTTGTCAACGTCGTCAACCAGCTCGATGAGGGTCTCCTCATGACTTGGCAAGGGATTCAAATGCGGAGAAACTCGTGGCAAGAC GGAGTCCGGGGAACCAACTGCCCGATCCAACCAAAGAGGAACTTCACTTACAATTTCCAAGTCAAGGACCAGATCGGAAGCTTCTTCTACTACCCGTCGC TTCACCTCCAGAGATCCTCCGGTGGGTTCGGTCCAATCGTTGTCAACAACAGGGAAGTGATTGAGATCCCTTTCCGAAAGCCCGACGGCGACATCAACTT GCTCATCGGCGATTGGTACACTCAAAACCATACGGGTTTGAGGGCGGTTCTTGATGATGGGAAAGAGCTAGGGATGCCTGATGGAGTTCTGATCAATGGG AAGGGACCTTTCAAGTATAACTCAAGTGTTCCTGATGGTATCAAGCATGAGACCATCGATGTTGACCCGGGCAAAATATACAGGCTAAGAGTCCACAACG TAGGAACATCAACAACGTTAAATCTCAGAATCCAAGGCCACAACATGATATTGGTTGAGACGGAGGGCCGATACACGATCCAGCAAAACTACAGCAGTTT CGACATCCATGTGGGACAGTCATACTCTTTCCTGGTCACCATGGACCAGGACGCGGCCAGCGATTACTACATTGTTGCGAGCGCTCGATACGTGAATGAG TCGGTGTGGCAGAGGGTCACGGGGGTAGCCGTCTTGCACTATTCCAACTCCAAGGGTCCCGCCAGTGGGCCCCTGCCTGATGCTCCCAATGATATTTATA ACCAGTGGTCTGCCATGAATCAAGCCAAGTCTATCAGGCAGAACACGACGGCAAGTGGAGCAAGGCCAAACCCACAGGGATCATTCCGGTACGGCTCGAT CAACACAACCTCCACCTACATCCTAAGAGCTCTGCCACCGAAAACAGATGGTAAACGACGTCACTCGACTCTGAATGGGATCTCATTCAAGAATCCAGAG ACACCCATAAGGCTAGCTGATGTCCATAAGGTCAAAGGAGTTTACAAGCTGGATTTCCCAGCTCAGCCGCCATCCATCGTCAACGGCGGCGGAGGGGCTA AGGTGGAGACCTCTGTTATGAATGCTACGTACAGAGGGTTCGTGGAGTTGGTGCTGCAGAACAATGATACCAAGTTGCTAAGCTTTCACTTGGATGGCTA CTCCTTGTTTGTTGTCGGGATGGATTGGGGGGTCTGGTCGGAGAGCAATAGGGATTCGTACAACAAATGGGATGCGATTTCTCGGTCTACTGTTGAGGTG CATCCAGGATCATGGACAGCAGTCTACGCATCACTCGACAACGTCGGGGTGTGGAATCTCCGAGTCGAGAATCTTGACAGATGGTATCTCGGACTCGAAA CCTACATGAGAATTGTTAACCCGGAGGAAAACGGCGAGACCGAGATGGGCCCGCCTGACAATGTCGTGTTCTGTGGTCAGCTTCAGAGCTTGGAGAAGGC AACATCATCAGCTGCAGGTTCAACATCATCAAATGTGCTTTCTAGTTTGGTGATTGGTGTTGTTTCTGCTCTGTTCTTGATCTCGGTTTGA
AA sequence Show only first row Show all	>Lus10027207 pacid=23145490 polypeptide=Lus10027207 locus=Lus10027207.g ID=Lus10027207.BGIv1.0 annot-version=v1.0 MAQILLLLLQFLSLSIALFSEIPCSLAADPTVSYDFKVSYITASPLGVPQQVIAVNGEFPGQVINATTNYNVVVNVVNQLDEGLLMTWQGIQMRRNSWQD GVRGTNCPIQPKRNFTYNFQVKDQIGSFFYYPSLHLQRSSGGFGPIVVNNREVIEIPFRKPDGDINLLIGDWYTQNHTGLRAVLDDGKELGMPDGVLING KGPFKYNSSVPDGIKHETIDVDPGKIYRLRVHNVGTSTTLNLRIQGHNMILVETEGRYTIQQNYSSFDIHVGQSYSFLVTMDQDAASDYYIVASARYVNE SVWQRVTGVAVLHYSNSKGPASGPLPDAPNDIYNQWSAMNQAKSIRQNTTASGARPNPQGSFRYGSINTTSTYILRALPPKTDGKRRHSTLNGISFKNPE TPIRLADVHKVKGVYKLDFPAQPPSIVNGGGGAKVETSVMNATYRGFVELVLQNNDTKLLSFHLDGYSLFVVGMDWGVWSESNRDSYNKWDAISRSTVEV HPGSWTAVYASLDNVGVWNLRVENLDRWYLGLETYMRIVNPEENGETEMGPPDNVVFCGQLQSLEKATSSAAGSTSSNVLSSLVIGVVSALFLISV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51480		SKS2	SKU5 similar 2 (.1)		Lus10027207 [exp]	0	1
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10034098 [exp]	4.6	0.8050
AT1G21910	AP2_ERF	DREB26	dehydration response element-b...		Lus10003740 [exp]	7.3	0.8012
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10017289 [exp]	8.7	0.7536
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000617 [exp]	9.5	0.8099
AT2G28250		NCRK	Protein kinase superfamily pro...		Lus10016098 [exp]	11.7	0.7117
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Lus10006407 [exp]	12.2	0.8138
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000356 [exp]	14.1	0.7876
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025226 [exp]	16.4	0.7693
AT3G47570			Leucine-rich repeat protein ki...		Lus10033363 [exp]	18.3	0.7250
AT4G00770			unknown protein		Lus10009318 [exp]	22.7	0.7067

Compare expression of checked genes

Lus10027207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.