Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 455 / 2e-145 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT5G35450 286 / 6e-83 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 277 / 2e-79 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G48620 272 / 1e-77 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 272 / 2e-77 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59780 265 / 3e-75 NB-ARC domain-containing disease resistance protein (.1) AT1G58390 260 / 2e-73 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G50180 251 / 9e-71 NB-ARC domain-containing disease resistance protein (.1) AT1G58848 253 / 2e-70 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59218 253 / 2e-70 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038983 [exp] 1724 / 0 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 449 / 4e-143 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 443 / 1e-140 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 429 / 2e-135 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 422 / 5e-133 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 422 / 9e-133 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 418 / 5e-131 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 369 / 1e-112 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10019530 [exp] 205 / 3e-56 AT3G07040 311 / 4e-95 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G134500 [exp] 598 / 0 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 573 / 0 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 571 / 0 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 559 / 0 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134701 [exp] 554 / 0 AT3G07040 464 / 6e-149 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 550 / 0 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134475 [exp] 541 / 2e-178 AT3G07040 413 / 1e-129 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.018G013500 [exp] 540 / 3e-178 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099000 [exp] 540 / 4e-178 AT3G07040 479 / 2e-154 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134601 [exp] 523 / 4e-173 AT3G07040 443 / 2e-142 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10027281 pacid=23145428 polypeptide=Lus10027281 locus=Lus10027281.g ID=Lus10027281.BGIv1.0 annot-version=v1.0 ATGAATAAGGAGTCCGATGGCAGCGTACGGAGCAGTGGCGTTCCTCCTCACGAAAATGAAGGATTGGTGTCGCGCGAGTACGGACTTCTGGCCGGAATCG ACAAGGCGGTGGAAGAGCTCCGGCGCGAATTCCAGACCATACAGGCCTTCCTGGAGGAGGCCGACGCCAGGGGACAGACAAACGAGCAAGTAAGAGTATG GGTAAGCCAAGTACGCGACTTGGCCTACGACATCGAAGACGCACTCGACATGTTCACTTTCCACACCTCGGTACAGAGCAGCTTCCATCTCTACCCGGAA TTCCTCCAGCTCAGGAAGCGACACTCCGTGGCCGTTTTGATCCAGGACATCAACTCCAAGCTCTCCAGTGTCCGCCAAACAAGGGAGCGTTACCGCCAGC TAGGCACCTCCCCGGCCCCATCACCCGCGACCGTGGCATCCCAAGAGAGCTTCACCACCCATTTCAACCGGGTGGCCCCACTGTTTGAGATGGAGCCACT CGGTATCGACCAGTCACTGTCTGAATTCACGGCATGGGCCAAGTTCGGAGAGCCCAGGCTCAAGGTGCGGTTCGTGGTCGGAATGGGTGGTTTGGGTAAG ACCCTGTTAGCTAAGCGGGTGTATGAAGCTGCGAAACGCGGGTTCGAATTCGACTGTTGGGGTTGGATCCAGATATCCAGGTCCCAGAGCAAAGAGCAAG TCCTCTGGACCATGCTGAAGCGGTTGTTCGAATCGAGCAACGAGCCCATCCCTCCCGAGTTTCATACAATCAACGTCGTCCAATTGATGGAGAAACTGGC GAGCTTCCTCAACGACAAAAAGTACATCCTGGTATTCGACGATCTGTGGAACAGAGACCTCTGGGAGTCGATCAAATGCGCTCTGCCGACCGGGATGCAT TCGAGAATCATGATCACCACAAGGCGCGGTGACATCGCGCACTTTTGCAGCTACGATCAAGCCACGGCCGTATTCAATCTTGAGCCGTTGACTTCTTCAA TATCTCAGGAACTCTTCCTCAGGAAGGCATTTCCTGCTACAAGGGAGTGCCCTTCGTCAGGATTACTAGACTGGGCCAGGAAATTCCTGACGCAATGCGA AGGATGGCCTTTAGGGATCGTCACGATAGGGAAAGTTGTGTCGAAGATCGATCAAACCTCCGACTCGTGGAGACAGCTACACGACAGCCTGGGATCGGAG ATGGAGAAAGGAGGGCGCCTTTCTAGCATTACGAAAGTGCTCTCGGCAAACTATTCCGATCTTCCGTATTATCTGAAATACTGTTTGCTTTATTTCACCA TTTTTCCGGAGCATTATTCGATTAAGCGGAGAAGGTTGATTCGGATGTGGATTTCGGAAGGGCTAGTGAAGGAAGAGACAGGGAAGACCCCTGAAGAAGT GGCGCATAATTACCTCGAAGAGCTTATACAAAGGAATCTCGTCCTGGTCAACGAAATCGACTTCGATGGACGGGCCAAGACTTGCAGGGTTCATCGACTC CTCCACAAAATTATTGTTTCCATTTCTAAAGAAGAAAACTTCTGCAGAGTTTCTACAGGAAACCCTGCAGAAGTATTGAACGACAGAGTTCGTCGTTTAT CGGTTCGTAAAAGCAGACTGGGGCTATCAGGGACGACGAGCTCGAGCTTCCCTTGTGCTAGATCATTTTTCATGTTCGGAATCGAAGATCTGACGTATTC GAAATCCCAATCCGTTCTCTCGAGCTTTAGCATTTTAAAGGTCCTGGATCTCGAAGGAGCTCCTCTCGATAAATTCCCTACCGCAATTCTCAATTTAGTA CTTCTCAAGTACTTGAGCTTGAGGAATACCAGCATCAGGAAGCTTCCTAGATCGATTCCCAAGCTTCAGAATTTGGAAACTCTCGACCTGAAGCAGACAT TCGTGACATCTGTTCCGGCAAAGATATTCAGGCTGGGAAAGCTAAGGCATTTACTGATTTATCATTACAGCATCAGGATTCACGTAACTATCGATAGCAT CCAGGGATTCAGAGCTTCCGCAAGCATAGGGAAGTTAGTTTCTCTTCAGAAGCTGACCTGTCTATGCGCAAACAGAGACGTCAGGATGCTGGTGGCCTTA AAAAACCTGACGAACTTGAAAAAATTGGGGATTGTGGAGTTGAAGGAAGAGGATGGCAGGCATCTCTGTTATTCCATCGAGAAGATGCCAAACCTCCAGA CGTTGGACTTGGCCGCGGCAGCGAAAGGCGAGGTGATCGACCTGAACGCTCTCCGAGACCCGCCAAGGATGCTTCGACGTCTGTTTCTGAAAGGCAAGCT TCAGAAGCTACCGGAATGGGTCTCGTCGTTACACGACCTAGTGCGGATCAGGCTGAGATGGTCGAAGCTAGAAGTTAGCCCGATCGATGCGCTTGAGGAT CTACCCAATCTGAGGGAGATTCAGTTGGTGGATGCTTATGCAGGAAGGCAACTGGTTTTCAGTTCAGGAAAGTTTCAGAATCTGAAAGTGTTGATGGTTG AGAATTTGAAATCTCTGGAAGAGATAGTGATCGAGAGCGGGAGCTTGCGGAGGCTTGAAAATCTTGTGATAAGGCAGTGCAAGATGATGGAGCAGGTTCC TGAAGGGATTGACAGGCTGAGTGAAATGAAAGAGCTGCAGCTTTACGATATGTCGGACAATCTGGTTACCCAGATTCAAGTCGATGGGGCTTGTCGGCAG TTGGTTCATCATATTCCTTTCATCTGTGCCTACACTTTGGAGAGCGGCGGGTATTGGCGGCCTAAGGTTCTTTCCTGA
AA sequence Show only first row Show all	>Lus10027281 pacid=23145428 polypeptide=Lus10027281 locus=Lus10027281.g ID=Lus10027281.BGIv1.0 annot-version=v1.0 MNKESDGSVRSSGVPPHENEGLVSREYGLLAGIDKAVEELRREFQTIQAFLEEADARGQTNEQVRVWVSQVRDLAYDIEDALDMFTFHTSVQSSFHLYPE FLQLRKRHSVAVLIQDINSKLSSVRQTRERYRQLGTSPAPSPATVASQESFTTHFNRVAPLFEMEPLGIDQSLSEFTAWAKFGEPRLKVRFVVGMGGLGK TLLAKRVYEAAKRGFEFDCWGWIQISRSQSKEQVLWTMLKRLFESSNEPIPPEFHTINVVQLMEKLASFLNDKKYILVFDDLWNRDLWESIKCALPTGMH SRIMITTRRGDIAHFCSYDQATAVFNLEPLTSSISQELFLRKAFPATRECPSSGLLDWARKFLTQCEGWPLGIVTIGKVVSKIDQTSDSWRQLHDSLGSE MEKGGRLSSITKVLSANYSDLPYYLKYCLLYFTIFPEHYSIKRRRLIRMWISEGLVKEETGKTPEEVAHNYLEELIQRNLVLVNEIDFDGRAKTCRVHRL LHKIIVSISKEENFCRVSTGNPAEVLNDRVRRLSVRKSRLGLSGTTSSSFPCARSFFMFGIEDLTYSKSQSVLSSFSILKVLDLEGAPLDKFPTAILNLV LLKYLSLRNTSIRKLPRSIPKLQNLETLDLKQTFVTSVPAKIFRLGKLRHLLIYHYSIRIHVTIDSIQGFRASASIGKLVSLQKLTCLCANRDVRMLVAL KNLTNLKKLGIVELKEEDGRHLCYSIEKMPNLQTLDLAAAAKGEVIDLNALRDPPRMLRRLFLKGKLQKLPEWVSSLHDLVRIRLRWSKLEVSPIDALED LPNLREIQLVDAYAGRQLVFSSGKFQNLKVLMVENLKSLEEIVIESGSLRRLENLVIRQCKMMEQVPEGIDRLSEMKELQLYDMSDNLVTQIQVDGACRQ LVHHIPFICAYTLESGGYWRPKVLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10027281 [exp]	0	1
AT4G12010			Disease resistance protein (TI...		Lus10016029 [exp]	5.0	0.7814
AT5G36930			Disease resistance protein (TI...		Lus10025497 [exp]	9.6	0.7055
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10006848 [exp]	10.9	0.8149
AT5G57710			Double Clp-N motif-containing ...		Lus10020886 [exp]	11.0	0.7976
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037086 [exp]	12.4	0.7613
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10003095 [exp]	12.5	0.7562
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10029945 [exp]	18.2	0.7869
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005016 [exp]	22.8	0.7871
AT4G24290			MAC/Perforin domain-containing...		Lus10015324 [exp]	23.9	0.7259
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10005995 [exp]	25.1	0.7534

Compare expression of checked genes

Lus10027281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.