Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12870 209 / 8e-66 MYB ATMYB46 myb domain protein 46 (.1) AT3G08500 204 / 4e-63 MYB ATMYB83 myb domain protein 83 (.1) AT1G57560 189 / 3e-57 MYB ATMYB50 myb domain protein 50 (.1) AT1G09540 186 / 1e-55 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT5G26660 186 / 1e-55 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT3G13890 185 / 2e-55 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT4G01680 181 / 4e-55 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT1G63910 174 / 4e-51 MYB AtMYB103 myb domain protein 103 (.1) AT3G12720 166 / 1e-48 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT5G14750 159 / 4e-47 MYB WER1, WER, AtMYB66 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002559 [exp] 582 / 0 AT5G12870 225 / 7e-72 myb domain protein 46 (.1) Lus10031281 [exp] 277 / 2e-91 AT3G08500 228 / 1e-72 myb domain protein 83 (.1) Lus10031850 [exp] 271 / 7e-89 AT3G08500 224 / 1e-70 myb domain protein 83 (.1) Lus10039610 [exp] 212 / 2e-65 AT5G12870 219 / 3e-69 myb domain protein 46 (.1) Lus10029520 [exp] 212 / 3e-65 AT5G12870 220 / 2e-69 myb domain protein 46 (.1) Lus10015608 [exp] 181 / 1e-53 AT3G13890 249 / 8e-80 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10019707 [exp] 179 / 1e-53 AT3G08500 184 / 2e-56 myb domain protein 83 (.1) Lus10038022 [exp] 181 / 6e-53 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10024669 [exp] 172 / 5e-49 AT1G63910 260 / 2e-82 myb domain protein 103 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G053900 [exp] 254 / 2e-82 AT5G12870 224 / 8e-72 myb domain protein 46 (.1) Potri.001G258700 [exp] 231 / 2e-73 AT5G12870 219 / 4e-70 myb domain protein 46 (.1) Potri.009G061500 [exp] 220 / 4e-69 AT3G08500 224 / 6e-71 myb domain protein 83 (.1) Potri.001G267300 [exp] 207 / 2e-64 AT3G08500 266 / 1e-87 myb domain protein 83 (.1) Potri.013G001000 [exp] 188 / 9e-56 AT1G09540 382 / 1e-130 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.005G001600 [exp] 186 / 4e-55 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.015G082700 [exp] 184 / 9e-55 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.001G197000 [exp] 183 / 1e-54 AT3G13890 256 / 1e-82 MALE STERILE 35, myb domain protein 26 (.1.2) Potri.012G084100 [exp] 183 / 1e-54 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.014G111200 [exp] 182 / 3e-53 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10027369 pacid=23145572 polypeptide=Lus10027369 locus=Lus10027369.g ID=Lus10027369.BGIv1.0 annot-version=v1.0 ATGAGGAACCCAGAAGCCAAGAACAGTAGTAATAACAGTACTACTACTACCAAGGTGAGAAAAGGGCTTTGGTCACCTGAGGAAGATGAGAAGTTGATGA ACTACATGATGAGCAATGGACAAGGGTGTTGGAGTGATGTTGCTAAGAATGCCGGCTTGCATAGATGCGGAAAGAGCTGTCGTCTCCGATGGATCAACTA CCTTAGGCCCGACCTCAAGAGAGGTGCTTTCTCCCCTCAGGAAGAGGACCTCATCGTACACCTACATTCTCTTCTCGGCAATAGGTGGTCACAAATTGCG GCTCGTATGCCAGGAAGGACAGACAACGAGATCAAGAATTTCTGGAACTCGATCATCAAAAAACGACAAAAGAGCATGTCTTCTTCCTCTACCTCGCCAA ACACAAGTGACCATTCATCCATGGAACCTAAGAAAGACCATACCATGCGGGTACCGCCTCCTAATTCATTATCATCAAGGACAATATTCATGGAGCCACC CATGTTCATCGACGAATCTTCATTGACATCGTTACAGATCCTCGAGGATCAACAATATCACCATCATCATCACGGTTTGATGAACATGTATGGCCATGCA AATCCATACTTGATGGCTCCTCTTGCTTCCATGGTTGATGATCATCATCATGGTGTTTCATCATATGGATTGGAGCAAGGTTTTTTCGAGAAGGAGGTTC AAGTACTCCCACCGTTAACAGAGAGCATAACCATCGATGGTGCCCACGACAATATTAGGTGTACTAACCATGGACGTTATTCATGTGATCGGTCTGAGTT TGCCTCTACTATGCCATCTAGCGTATCAAACTTCCTAGTCAAGAAGAAAGACATTGATGTTAGCACCAAGAACAAAAGCAAGTACCAAATGTGGAATGAT ACCAACAACAACATGTACAATAACAAGATAAAAAACAACATCATGGGTAGCTTTTGGCAAGGAGATCATCAGATTCAAGACCAAGTACTAGGTAGTACTA AAGTTGGGGGATGGGACTTTGAGGAGCTCATGAAAGATGTCTCCTCCTTCCCTTTTCTTGAGTTCCAAAATTAG
AA sequence Show only first row Show all	>Lus10027369 pacid=23145572 polypeptide=Lus10027369 locus=Lus10027369.g ID=Lus10027369.BGIv1.0 annot-version=v1.0 MRNPEAKNSSNNSTTTTKVRKGLWSPEEDEKLMNYMMSNGQGCWSDVAKNAGLHRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIVHLHSLLGNRWSQIA ARMPGRTDNEIKNFWNSIIKKRQKSMSSSSTSPNTSDHSSMEPKKDHTMRVPPPNSLSSRTIFMEPPMFIDESSLTSLQILEDQQYHHHHHGLMNMYGHA NPYLMAPLASMVDDHHHGVSSYGLEQGFFEKEVQVLPPLTESITIDGAHDNIRCTNHGRYSCDRSEFASTMPSSVSNFLVKKKDIDVSTKNKSKYQMWND TNNNMYNNKIKNNIMGSFWQGDHQIQDQVLGSTKVGGWDFEELMKDVSSFPFLEFQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10027369 [exp]	0	1
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10029520 [exp]	1.7	0.9238
AT1G51640		ATEXO70G2	exocyst subunit exo70 family p...		Lus10035750 [exp]	4.7	0.8879
AT2G33170			Leucine-rich repeat receptor-l...		Lus10023681 [exp]	8.1	0.8571
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10025955 [exp]	9.9	0.8413
					Lus10001135 [exp]	10.7	0.8258
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10000249 [exp]	11.6	0.7803
AT2G20010			Protein of unknown function (D...		Lus10012970 [exp]	15.8	0.8434
AT5G63930			Leucine-rich repeat protein ki...		Lus10011761 [exp]	17.9	0.8307
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10028974 [exp]	18.5	0.8438
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Lus10002513 [exp]	20.7	0.8005

Compare expression of checked genes

Lus10027369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.