Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51990 192 / 9e-62 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT4G25470 179 / 1e-56 AP2_ERF DREB1C, FTQ4, CBF2, ATCBF2 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) AT4G25490 175 / 3e-55 AP2_ERF DREB1B, CBF1, ATCBF1 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) AT4G25480 172 / 4e-54 AP2_ERF CBF3, DREB1A, ATCBF3 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) AT1G63030 141 / 2e-42 AP2_ERF DDF2�ADREB1E DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2) AT1G12610 140 / 2e-41 AP2_ERF DDF1, DREB1F, FTL1 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) AT2G36450 97 / 4e-25 AP2_ERF HRD HARDY, Integrase-type DNA-binding superfamily protein (.1) AT5G52020 97 / 1e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G25810 93 / 3e-23 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT5G11590 91 / 3e-22 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031657 [exp] 291 / 2e-100 AT5G51990 235 / 2e-78 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10019455 [exp] 202 / 2e-65 AT5G51990 236 / 1e-78 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10027414 [exp] 184 / 6e-59 AT4G25490 208 / 1e-68 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10031654 [exp] 172 / 2e-54 AT4G25490 201 / 9e-66 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10029601 [exp] 155 / 4e-47 AT1G12610 191 / 3e-61 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10006334 [exp] 154 / 1e-46 AT1G12610 193 / 3e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10017829 [exp] 152 / 1e-46 AT1G63030 181 / 1e-58 DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10001871 [exp] 153 / 2e-46 AT1G12610 193 / 4e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10006332 [exp] 152 / 6e-46 AT1G12610 194 / 1e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134100 [exp] 196 / 6e-63 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.015G136400 [exp] 183 / 8e-58 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110700 [exp] 169 / 2e-52 AT5G51990 201 / 8e-65 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110800 [exp] 169 / 4e-52 AT4G25470 164 / 4e-50 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Potri.009G147700 [exp] 117 / 9e-32 AT4G25480 108 / 3e-28 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) Potri.004G187001 [exp] 112 / 8e-30 AT4G25490 124 / 1e-34 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Potri.016G018600 [exp] 97 / 1e-24 AT2G36450 135 / 7e-40 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.006G021000 [exp] 96 / 2e-24 AT2G36450 122 / 5e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.001G110500 [exp] 91 / 1e-22 AT5G52020 152 / 1e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.014G055700 [exp] 92 / 2e-22 AT2G44940 206 / 2e-65 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10027412 pacid=23144622 polypeptide=Lus10027412 locus=Lus10027412.g ID=Lus10027412.BGIv1.0 annot-version=v1.0 ATGGATCAGCAGCTCTGCCATATGGCCGGACCGTCACGGCAGTCCGACGATGGAAGCTCGGCGGCGGCGGAAGGGATGACGCTGGCTTCGAACTGCCCAA AGAAGCGGGCAGGGAGGAAGAAGTTCACAGAGACGCGTCATCCGATTTACCGGGGAGTCCGCCAACGAAGCACCGGGAAATGGGTCTGCGAAGTCCGGGA GCCCAACAAGAAGTCCCGGATCTGGCTCGGTACTTTCCCCACCGTCGAGATGGCGGCGCGTGCCCACGACGTGGCGGCTTTGGCCCTCAGAGGGAGCTCC GCATGCTTGAACTTCGCCGACTCTGCCACGCGGCTCCGCATCCCTGAGTCGGCGGATACAAAGGAGATTCAGAGGGCCGCCGCTGAAGCGGCTGAGCTGT TCCGTCCGCCGGAAGTTGTTTACGGTCAGGATTCTAGCCTGACTCCGCCGGTGACGGCGACAGCAGAGGAGGAAGGAGGAGATCCAGATGTTGATGATGA TTTCCGTCGTTCGTTCTACATGGACGAGGATGATGTGTTTGGGATGCCGGGGCTATTGGCGAGCATGGCGGAAGGAATGATGCTGCCGCCGCCGGTGGAC AGCCTGGGAAGTTATGGTAATGATGATGATGATGACATGGCAGGTGATGTGTCGCTGTGGAGTTACTCGTTTTGA
AA sequence Show only first row Show all	>Lus10027412 pacid=23144622 polypeptide=Lus10027412 locus=Lus10027412.g ID=Lus10027412.BGIv1.0 annot-version=v1.0 MDQQLCHMAGPSRQSDDGSSAAAEGMTLASNCPKKRAGRKKFTETRHPIYRGVRQRSTGKWVCEVREPNKKSRIWLGTFPTVEMAARAHDVAALALRGSS ACLNFADSATRLRIPESADTKEIQRAAAEAAELFRPPEVVYGQDSSLTPPVTATAEEEGGDPDVDDDFRRSFYMDEDDVFGMPGLLASMAEGMMLPPPVD SLGSYGNDDDDDMAGDVSLWSYSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10027412 [exp]	0	1
AT4G34410	AP2_ERF	RRTF1 (Redox Re...	redox responsive transcription...		Lus10014054 [exp]	1.7	0.9502
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10029073 [exp]	2.4	0.9275
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10022729 [exp]	4.5	0.9377
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10022808 [exp]	4.9	0.9150
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Lus10005895 [exp]	7.1	0.9123
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10032808 [exp]	8.2	0.8479
					Lus10001533 [exp]	8.5	0.9243
AT5G48655			RING/U-box superfamily protein...		Lus10022774 [exp]	8.8	0.9161
AT1G56140			Leucine-rich repeat transmembr...		Lus10031777 [exp]	9.5	0.9133
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10008113 [exp]	9.7	0.9198

Compare expression of checked genes

Lus10027412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.