Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52020 132 / 1e-38 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G12630 126 / 8e-37 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G36450 102 / 2e-27 AP2_ERF HRD HARDY, Integrase-type DNA-binding superfamily protein (.1) AT5G51990 99 / 7e-26 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT4G25490 91 / 1e-22 AP2_ERF DREB1B, CBF1, ATCBF1 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) AT5G25810 89 / 6e-22 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT5G11590 89 / 7e-22 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT4G25480 87 / 3e-21 AP2_ERF CBF3, DREB1A, ATCBF3 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) AT3G60490 87 / 7e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G44940 87 / 8e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031655 [exp] 227 / 1e-76 AT5G52020 143 / 7e-43 Integrase-type DNA-binding superfamily protein (.1) Lus10031652 [exp] 195 / 3e-64 AT5G52020 150 / 5e-46 Integrase-type DNA-binding superfamily protein (.1) Lus10031656 [exp] 169 / 8e-54 AT5G52020 148 / 5e-45 Integrase-type DNA-binding superfamily protein (.1) Lus10027415 [exp] 123 / 3e-36 AT5G52020 78 / 2e-18 Integrase-type DNA-binding superfamily protein (.1) Lus10017830 [exp] 115 / 3e-32 AT5G52020 137 / 7e-40 Integrase-type DNA-binding superfamily protein (.1) Lus10024492 [exp] 114 / 2e-31 AT5G52020 140 / 3e-41 Integrase-type DNA-binding superfamily protein (.1) Lus10014376 [exp] 110 / 3e-30 AT2G36450 167 / 2e-52 HARDY, Integrase-type DNA-binding superfamily protein (.1) Lus10024491 [exp] 97 / 4e-25 AT4G25480 187 / 6e-60 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) Lus10031654 [exp] 95 / 2e-24 AT4G25490 201 / 9e-66 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G121200 [exp] 151 / 7e-47 AT5G52020 149 / 2e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.001G110500 [exp] 142 / 2e-43 AT5G52020 152 / 1e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.015G136300 [exp] 143 / 1e-42 AT5G52020 132 / 7e-38 Integrase-type DNA-binding superfamily protein (.1) Potri.012G134000 [exp] 127 / 2e-36 AT5G52020 123 / 5e-34 Integrase-type DNA-binding superfamily protein (.1) Potri.006G021000 [exp] 117 / 6e-33 AT2G36450 122 / 5e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.016G018600 [exp] 116 / 1e-32 AT2G36450 135 / 7e-40 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.012G134100 [exp] 100 / 6e-26 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.015G136400 [exp] 96 / 3e-24 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110800 [exp] 93 / 2e-23 AT4G25470 164 / 4e-50 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Potri.001G155700 [exp] 90 / 5e-22 AT2G44940 159 / 1e-47 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10027413 pacid=23144558 polypeptide=Lus10027413 locus=Lus10027413.g ID=Lus10027413.BGIv1.0 annot-version=v1.0 ATGGCCGCCAACAAGCCTGACCACCCTCCTCCACAGCCTACCCAGCCGGCGCAATCGTCGTCTTCAACTCCATCTCCCGCCTCGATGTACAAAGGGGTCC GGATCCGGAGCGGGAAATGGGTGTCGGAGATCCGAGAACCCAAGAAAACAACCCGGATTTGGCTAGGGACCTATCCTACTCCTGAAATGGCAGCGGCAGC GTACGACGTCGCCGCGATAGCCCTCAAGGGTCGTGAAACTCTCCTCAATTTCCCTTCCTCCATCGGCTCTTACCCTACCCCGGCGTCAACCTCGCCCTCC GACATCCGGGCAGCTGCCCACACTGCTGCAGCTGCTCTCGTGGCCCCGAAGCCTTCCTCTGGGCAGGCTTCGGGCGAGGGGAGAAATCTGGAGGAGTATA TGGATGTGGAGGACGTGCTGGACATGCCGAATCTGTTGGTGGAAATGGCGGGAGGGTTGATGGTCAGCCCTCCTAGGATGGGTGATGCGACGTTGTATGG CGATTCTCCGGATAATTCGGAGGGAGAATCCTTGTGGTCGTACGATGAGTACTGA
AA sequence Show only first row Show all	>Lus10027413 pacid=23144558 polypeptide=Lus10027413 locus=Lus10027413.g ID=Lus10027413.BGIv1.0 annot-version=v1.0 MAANKPDHPPPQPTQPAQSSSSTPSPASMYKGVRIRSGKWVSEIREPKKTTRIWLGTYPTPEMAAAAYDVAAIALKGRETLLNFPSSIGSYPTPASTSPS DIRAAAHTAAAALVAPKPSSGQASGEGRNLEEYMDVEDVLDMPNLLVEMAGGLMVSPPRMGDATLYGDSPDNSEGESLWSYDEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12630	AP2_ERF		Integrase-type DNA-binding sup...		Lus10027413 [exp]	0	1
					Lus10028567 [exp]	1.4	0.9144
AT1G21400			Thiamin diphosphate-binding fo...		Lus10000772 [exp]	2.0	0.9011
AT3G63380			ATPase E1-E2 type family prote...		Lus10004087 [exp]	2.6	0.8854
AT3G18550	TCP	AtBRC1, ATTCP18...	BRANCHED 1, TCP family transcr...		Lus10021713 [exp]	4.8	0.8432
AT5G47880		ERF1-1	eukaryotic release factor 1-1 ...		Lus10031479 [exp]	4.9	0.9065
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006594 [exp]	4.9	0.9035
					Lus10018873 [exp]	6.6	0.8442
					Lus10033844 [exp]	7.9	0.8276
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10032159 [exp]	8.1	0.8223
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10026614 [exp]	8.4	0.8210

Compare expression of checked genes

Lus10027413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.