Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25470 186 / 7e-60 AP2_ERF DREB1C, FTQ4, CBF2, ATCBF2 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) AT4G25480 186 / 8e-60 AP2_ERF CBF3, DREB1A, ATCBF3 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) AT4G25490 184 / 2e-59 AP2_ERF DREB1B, CBF1, ATCBF1 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) AT5G51990 180 / 1e-57 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT1G12610 159 / 1e-49 AP2_ERF DDF1, DREB1F, FTL1 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) AT1G63030 155 / 3e-48 AP2_ERF DDF2�ADREB1E DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2) AT4G32800 114 / 8e-32 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G25810 113 / 2e-31 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT2G36450 112 / 3e-31 AP2_ERF HRD HARDY, Integrase-type DNA-binding superfamily protein (.1) AT5G11590 111 / 2e-30 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031654 [exp] 256 / 5e-88 AT4G25490 201 / 9e-66 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10027412 [exp] 198 / 2e-64 AT5G51990 239 / 3e-80 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10031657 [exp] 188 / 2e-60 AT5G51990 235 / 2e-78 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10024491 [exp] 171 / 9e-54 AT4G25480 187 / 6e-60 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) Lus10001871 [exp] 170 / 2e-53 AT1G12610 193 / 4e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10006334 [exp] 170 / 3e-53 AT1G12610 193 / 3e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10006332 [exp] 169 / 4e-53 AT1G12610 194 / 1e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10019455 [exp] 169 / 4e-53 AT5G51990 236 / 1e-78 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10029601 [exp] 168 / 2e-52 AT1G12610 191 / 3e-61 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134100 [exp] 214 / 1e-70 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.015G136400 [exp] 197 / 6e-64 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110800 [exp] 178 / 2e-56 AT4G25470 164 / 4e-50 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Potri.001G110700 [exp] 174 / 7e-55 AT5G51990 201 / 8e-65 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.009G147700 [exp] 135 / 4e-39 AT4G25480 108 / 3e-28 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) Potri.004G187001 [exp] 122 / 2e-34 AT4G25490 124 / 1e-34 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Potri.006G021000 [exp] 116 / 8e-33 AT2G36450 122 / 5e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.016G018600 [exp] 115 / 5e-32 AT2G36450 135 / 7e-40 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.003G121200 [exp] 112 / 2e-31 AT5G52020 149 / 2e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.015G136300 [exp] 113 / 5e-31 AT5G52020 132 / 7e-38 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10027414 pacid=23144608 polypeptide=Lus10027414 locus=Lus10027414.g ID=Lus10027414.BGIv1.0 annot-version=v1.0 ATGGACGATGAGGTGAAGTTGGCCGCAAGGTTCCCTAAAAGGCCTGCTGGCAGGAAGAAGTTCAGGGAGACACGTCATCCGGTGTACCACGGAGTCAGGC GGAGGGGGGACTCCGGCGGGAAGTGGGTGTCCGAGGTCCGGGAGCCGAAGAAGAAGACGAGGATATGGCTGGGAACTTTCCCCACTGCTGAAATGGCTGC GCGGGCTCATGACGTGGCGGCTCTTTCTTTGAGGGGGAGTTCGGCTTGCTTGAACTTTGCCGACTCGGCTTGGCTGCTTCCGGTTCCGGACTCGGCGGAT AGTAAGGGGATTCAGAAGGCGGCCGCTCAGGCGGCGGAGGGGTTTAGGCCGGCGGAAGGGACGGTGGTTACGGGGGGAGGGGAAACGGAAGGGGAAAAGG TGTTTTATATGGATGAGGAGGATGTGTTTGGGATGCCGGCGATTTTGGCGAGTATGGCGGAAGGGATGCTGTTGCCGCCGCCGGTTTGGGAGGACAGCGT TGAAGAAGACGATGATGACATGACAGCTGATGTGTCGTTGTGGAGTTACTCTATTTGA
AA sequence Show only first row Show all	>Lus10027414 pacid=23144608 polypeptide=Lus10027414 locus=Lus10027414.g ID=Lus10027414.BGIv1.0 annot-version=v1.0 MDDEVKLAARFPKRPAGRKKFRETRHPVYHGVRRRGDSGGKWVSEVREPKKKTRIWLGTFPTAEMAARAHDVAALSLRGSSACLNFADSAWLLPVPDSAD SKGIQKAAAQAAEGFRPAEGTVVTGGGETEGEKVFYMDEEDVFGMPAILASMAEGMLLPPPVWEDSVEEDDDDMTADVSLWSYSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25490	AP2_ERF	DREB1B, CBF1, A...	DRE BINDING PROTEIN 1B, C-repe...		Lus10027414 [exp]	0	1
AT2G04810			Protein of unknown function (D...		Lus10020538 [exp]	4.4	0.8571
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	6.6	0.8556
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	8.1	0.8556
AT3G14470			NB-ARC domain-containing disea...		Lus10032781 [exp]	8.4	0.8547
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	9.4	0.8556
					Lus10028949 [exp]	11.5	0.8019
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10021213 [exp]	11.5	0.8524
AT4G16270			Peroxidase superfamily protein...		Lus10017069 [exp]	13.2	0.8455
AT3G44220			Late embryogenesis abundant (L...		Lus10005214 [exp]	13.7	0.8248
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020333 [exp]	14.5	0.8024

Compare expression of checked genes

Lus10027414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.