Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48920 177 / 4e-54 MYB ATMYB45 myb domain protein 45 (.1) AT4G25560 172 / 8e-52 MYB LAF1, ATMYB18 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) AT5G52260 171 / 2e-51 MYB ATMYB19 myb domain protein 19 (.1) AT1G57560 151 / 1e-43 MYB ATMYB50 myb domain protein 50 (.1) AT5G26660 152 / 3e-43 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT4G01680 151 / 3e-43 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT1G63910 150 / 2e-42 MYB AtMYB103 myb domain protein 103 (.1) AT1G09540 148 / 9e-42 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT3G08500 147 / 9e-42 MYB ATMYB83 myb domain protein 83 (.1) AT3G13890 148 / 1e-41 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005740 [exp] 436 / 2e-155 AT5G52260 194 / 3e-61 myb domain protein 19 (.1) Lus10005739 [exp] 308 / 2e-105 AT5G52260 186 / 4e-58 myb domain protein 19 (.1) Lus10039213 [exp] 303 / 5e-103 AT4G25560 195 / 4e-61 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) Lus10027458 [exp] 295 / 1e-99 AT4G25560 190 / 4e-59 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) Lus10031281 [exp] 152 / 2e-43 AT3G08500 228 / 1e-72 myb domain protein 83 (.1) Lus10039610 [exp] 151 / 1e-42 AT5G12870 219 / 3e-69 myb domain protein 46 (.1) Lus10029520 [exp] 149 / 9e-42 AT5G12870 220 / 2e-69 myb domain protein 46 (.1) Lus10002559 [exp] 148 / 1e-41 AT5G12870 225 / 7e-72 myb domain protein 46 (.1) Lus10038395 [exp] 145 / 2e-41 AT3G12720 233 / 2e-75 myb domain protein 67 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G143400 [exp] 208 / 8e-66 AT4G25560 189 / 9e-59 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) Potri.012G140500 [exp] 204 / 3e-64 AT5G52260 189 / 9e-59 myb domain protein 19 (.1) Potri.015G082700 [exp] 159 / 9e-46 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.012G084100 [exp] 157 / 4e-45 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.001G099800 [exp] 149 / 8e-43 AT1G63910 319 / 3e-108 myb domain protein 103 (.1) Potri.008G081600 [exp] 149 / 1e-42 AT3G12720 262 / 2e-86 myb domain protein 67 (.1) Potri.003G132000 [exp] 149 / 1e-42 AT1G63910 317 / 2e-107 myb domain protein 103 (.1) Potri.009G053900 [exp] 149 / 2e-42 AT5G12870 224 / 8e-72 myb domain protein 46 (.1) Potri.003G155700 [exp] 149 / 2e-42 AT3G12720 240 / 1e-77 myb domain protein 67 (.1) Potri.005G001600 [exp] 150 / 5e-42 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10027456 pacid=23144561 polypeptide=Lus10027456 locus=Lus10027456.g ID=Lus10027456.BGIv1.0 annot-version=v1.0 ATGAAAGGATGCAAAGATCAGAAAGCAAAGCCAAAGCTCCGGAGAGGATTGTGGTCTCCGGAAGAAGATGATCGCCTCCGGAGCTATATCGTCAGGAACG GCCACGGCTGCCTGGCCACCGCTCCCATCAAAGGCGGCAAAATTATTTTGGTCCCTCCTTTTATTTTTATTTCACACATCAGGAACGGCCACGGCTGCTG GACCACCGTTCCCATCAATGCCGGCCTCCAAAGGAATGGAAAGAGTTGCAGGCTAAGGTGGATTAATTATTTACGGCCAGGATTAAAGCGCGGTTTGTTT TCCGCTCACGAAGAGGATACAATCCTGACCCTTCATCGCCTCCTCGGCAACAAGTGGTCGCAAATTGCGAGTCATTTGTCAGGAAGGACAGACAACGAAA TTAAAAATTACTGGCACTCGTATCTCAAAAGAAAGATTCTCAAACCTCAGCAATGTGCTAGCTCATCCTCTCTAGTCGAATCCTCCTCTGCCCTCTCATG TGACCGGCCAGAGGAGTCCCTACCGTCGATTTCCAACGTTTTCGCCTATCAATCCTATAACAACAACTTTACTATTGGCCTAGACAACGCTTCTTCGCGC CCTTTGTTGCCGCCGAACCTCATGTTTTCCGAGTGGCTATCGATGGACTGCTCAGAAAGCACCACATCAGCTGCGGAAGTGTTGTTTCCTAAAGAAGGGT TCGCGTGCGGAAGTGACGAGTTCAGCATTGACATCGTCCCGAGTAGCGAGTTTGTAGGCGAACATTTATTTCAGGGGTATGATCGGAACTCAACGACTAT GAGCGATGGATCGGCCAGTGACATGTTGTCATCGCAGCTCGATTTCGGAGATCAGGGTCTGGATGATGCTGATCAGTTCGTTGGATTCTGTACCGACTTC CACCTCGATGTGGATAGTGTTGTGTACATATGA
AA sequence Show only first row Show all	>Lus10027456 pacid=23144561 polypeptide=Lus10027456 locus=Lus10027456.g ID=Lus10027456.BGIv1.0 annot-version=v1.0 MKGCKDQKAKPKLRRGLWSPEEDDRLRSYIVRNGHGCLATAPIKGGKIILVPPFIFISHIRNGHGCWTTVPINAGLQRNGKSCRLRWINYLRPGLKRGLF SAHEEDTILTLHRLLGNKWSQIASHLSGRTDNEIKNYWHSYLKRKILKPQQCASSSSLVESSSALSCDRPEESLPSISNVFAYQSYNNNFTIGLDNASSR PLLPPNLMFSEWLSMDCSESTTSAAEVLFPKEGFACGSDEFSIDIVPSSEFVGEHLFQGYDRNSTTMSDGSASDMLSSQLDFGDQGLDDADQFVGFCTDF HLDVDSVVYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10027456 [exp]	0	1
AT5G44960			F-box/RNI-like/FBD-like domain...		Lus10015246 [exp]	1.0	0.9579
					Lus10004769 [exp]	2.0	0.9234
					Lus10024480 [exp]	2.4	0.9234
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10006160 [exp]	3.5	0.8659
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10013916 [exp]	5.9	0.8579
AT1G78690			Phospholipid/glycerol acyltran...		Lus10004768 [exp]	6.5	0.8411
					Lus10017698 [exp]	6.9	0.8491
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10017700 [exp]	10.1	0.8213
AT1G08030		AQC1, TPST	active quiescent center1, tyro...		Lus10016093 [exp]	10.6	0.8237
					Lus10005843 [exp]	13.0	0.8288

Compare expression of checked genes

Lus10027456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.