Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25560 189 / 7e-59 MYB LAF1, ATMYB18 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) AT3G48920 188 / 1e-58 MYB ATMYB45 myb domain protein 45 (.1) AT5G52260 182 / 2e-56 MYB ATMYB19 myb domain protein 19 (.1) AT1G57560 166 / 2e-49 MYB ATMYB50 myb domain protein 50 (.1) AT1G09540 167 / 3e-49 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT4G01680 160 / 7e-48 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT5G26660 162 / 2e-47 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT3G13890 159 / 3e-46 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT5G12870 156 / 8e-46 MYB ATMYB46 myb domain protein 46 (.1) AT3G12720 154 / 5e-45 MYB ATMYB67, AtY53 myb domain protein 67 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039213 [exp] 516 / 0 AT4G25560 195 / 4e-61 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) Lus10005740 [exp] 323 / 3e-111 AT5G52260 194 / 3e-61 myb domain protein 19 (.1) Lus10005739 [exp] 313 / 1e-107 AT5G52260 186 / 4e-58 myb domain protein 19 (.1) Lus10027456 [exp] 300 / 2e-101 AT5G52260 184 / 2e-56 myb domain protein 19 (.1) Lus10038395 [exp] 166 / 2e-49 AT3G12720 233 / 2e-75 myb domain protein 67 (.1) Lus10031281 [exp] 161 / 4e-47 AT3G08500 228 / 1e-72 myb domain protein 83 (.1) Lus10001226 [exp] 160 / 4e-47 AT3G12720 231 / 8e-75 myb domain protein 67 (.1) Lus10038022 [exp] 162 / 3e-46 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10039610 [exp] 157 / 3e-45 AT5G12870 219 / 3e-69 myb domain protein 46 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G143400 [exp] 263 / 2e-87 AT4G25560 189 / 9e-59 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) Potri.012G140500 [exp] 256 / 1e-84 AT5G52260 189 / 9e-59 myb domain protein 19 (.1) Potri.015G082700 [exp] 171 / 1e-50 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.012G084100 [exp] 167 / 3e-49 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.005G001600 [exp] 166 / 7e-48 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.002G185900 [exp] 166 / 9e-48 AT1G09540 291 / 5e-95 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.010G174500 [exp] 162 / 9e-48 AT3G12720 244 / 3e-79 myb domain protein 67 (.1) Potri.003G132000 [exp] 160 / 3e-47 AT1G63910 317 / 2e-107 myb domain protein 103 (.1) Potri.014G111200 [exp] 164 / 4e-47 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3) Potri.003G155700 [exp] 161 / 4e-47 AT3G12720 240 / 1e-77 myb domain protein 67 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10027458 pacid=23144580 polypeptide=Lus10027458 locus=Lus10027458.g ID=Lus10027458.BGIv1.0 annot-version=v1.0 ATGGAAGAATGCACAGACCAGAAGCCAACAAAGCCCAAGCACCGCAAGGGCTTGTGGTCGCCGGAGGAAGACCACCGCCTCCGTAGCTACATCGTTAAGA ACGGCCACGGCTGCCGGACCACCGTCCCCATTCACGCAGGCCTTCAAAGAAATGGAAAGAGTTGCAGGCTAAGGTGGATTAATTATCTACGGCCAGGATT AAAGCGTGGTTTGTTTTCCGCTTACGAAGAGGATACAATCGTGACCCTTCATCGCCTCCTCGGTAACAAATGGTCACAAATTTCACAACATTTACCGGGA AGAACAGACAACGAGATCAAGAACCATTGGCACTCATATCTAAAAAAGAAGTTGACGAAATCTCAAGGAATCGCGTCACACGACAATAATAATAAGATCC AACAATGTCCCACCTCCTGTAACTCCGACAATAACACAAGCACCTACCACAACCTCTCCCCGGACCACCGTGACGAGTCCTCACCGTCGTCCACAACAAC AACAGCCGTCGATCAGTGCTCTGTCCCGTTGTTTCCACCGAAGCTCATGTTCGCCGAGTGGCTATCGATGGACAGCTTCCCCGCGAATCCAGCTGCCGAA CCGTTGTTTTGTAATAAGGATTTCGCTAGTGGGAGTCACGATTTCGGTCTTGACATCCCAAACGGCGGGTTCTTCGGTGATAATTTGTTCCAAGGGTACC AACTTTGCGGCGAGAGAGGAGGGTATCAGAACTCGATGGCAACAACGGTGAGTGATGGATCAGCCAGCGACGTGTTTTCGTCTCAGTTTAATTTTGAAGA TCAGAGTTCGGACAACAGTGACCAGTTCGTTGAGTTCTGCAGCGATTTCCAGATCAATAGTGACAGCGTTCTGTACATATGA
AA sequence Show only first row Show all	>Lus10027458 pacid=23144580 polypeptide=Lus10027458 locus=Lus10027458.g ID=Lus10027458.BGIv1.0 annot-version=v1.0 MEECTDQKPTKPKHRKGLWSPEEDHRLRSYIVKNGHGCRTTVPIHAGLQRNGKSCRLRWINYLRPGLKRGLFSAYEEDTIVTLHRLLGNKWSQISQHLPG RTDNEIKNHWHSYLKKKLTKSQGIASHDNNNKIQQCPTSCNSDNNTSTYHNLSPDHRDESSPSSTTTTAVDQCSVPLFPPKLMFAEWLSMDSFPANPAAE PLFCNKDFASGSHDFGLDIPNGGFFGDNLFQGYQLCGERGGYQNSMATTVSDGSASDVFSSQFNFEDQSSDNSDQFVEFCSDFQINSDSVLYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10027458 [exp]	0	1
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10039006 [exp]	1.0	0.9289
AT1G05450			Bifunctional inhibitor/lipid-t...		Lus10010575 [exp]	3.5	0.9188
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006611 [exp]	3.9	0.9141
AT3G58190	AS2	LBD29, ASL16	ASYMMETRIC LEAVES 2-LIKE 16, l...		Lus10000613 [exp]	5.9	0.8939
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039363 [exp]	6.0	0.8877
AT3G07840			Pectin lyase-like superfamily ...		Lus10003001 [exp]	7.2	0.8839
AT3G29034			unknown protein		Lus10033010 [exp]	8.4	0.9041
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10012575 [exp]	9.6	0.9086
AT2G36570			Leucine-rich repeat protein ki...		Lus10018255 [exp]	10.2	0.8149
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10017521 [exp]	10.3	0.8144

Compare expression of checked genes

Lus10027458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.