Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61250 223 / 5e-72 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT4G28110 199 / 9e-63 MYB ATMYB41 myb domain protein 41 (.1) AT5G16770 200 / 2e-62 MYB ATMYB9 myb domain protein 9 (.1.2) AT4G21440 199 / 5e-62 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G05100 196 / 7e-61 MYB ATMYB74 myb domain protein 74 (.1) AT2G31180 192 / 1e-60 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT3G02940 195 / 2e-60 MYB ATMYB107 myb domain protein 107 (.1) AT1G34670 193 / 3e-59 MYB ATMYB93 myb domain protein 93 (.1) AT5G15310 191 / 4e-59 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G62610 191 / 5e-59 MYB PFG2, ATMYB11 PRODUCTION OF FLAVONOL GLYCOSIDES 2, myb domain protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039214 [exp] 474 / 8e-171 AT3G61250 226 / 7e-73 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10014784 [exp] 213 / 5e-68 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10030378 [exp] 209 / 4e-66 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10041142 [exp] 201 / 6e-63 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10036472 [exp] 201 / 7e-63 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10018418 [exp] 198 / 2e-61 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10039743 [exp] 192 / 2e-60 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 193 / 8e-60 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10033889 [exp] 190 / 6e-59 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G143500 [exp] 255 / 2e-84 AT3G61250 278 / 2e-93 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.012G140700 [exp] 246 / 5e-81 AT3G61250 276 / 1e-92 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.002G157600 [exp] 238 / 3e-77 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.014G081200 [exp] 225 / 2e-72 AT3G61250 352 / 6e-122 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.004G033100 [exp] 202 / 7e-63 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G041600 [exp] 199 / 1e-61 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G125900 [exp] 197 / 6e-61 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.007G093900 [exp] 196 / 1e-60 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.001G408700 [exp] 196 / 2e-60 AT4G21440 275 / 1e-90 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.005G164900 [exp] 194 / 4e-60 AT1G34670 309 / 7e-104 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10027459 pacid=23144440 polypeptide=Lus10027459 locus=Lus10027459.g ID=Lus10027459.BGIv1.0 annot-version=v1.0 ATGGGGAGGAGTCCTTGCTGCGACAAAAATGGAGTAAAGAGAGGAGCTTGGAGTGCTGAAGAAGACGAAATCCTCTCTGATTACATCAACAAGAATGGCC ATGGAAGCTGGCGCACTCTCCCTCAGAATGCAGGCTTACTTCGATGTGGCAAGAGTTGTCGTCTAAGGTGGACAAACTACCTTCGCCCTGATATCAAACG TGGACCTTTCAGTCCTGAAGAAGAATCCACCATCGTTGGCCTTCAAGCCACACTTGGTAACAAGTGGGCTTCAATAGCATCTCAGTTGCCGGGGAGGACA GACAACGAGATCAAGAACTACTGGAACACCCACCTCAGGAAACGATTCCCTGCTCCTCTTCCCAAGCAAGCTGCCCTGAACAAGGTCGAGGCTTGGCAGG CATCCATGGACGAGTCTTCATCAATGCTGCTGACTAATACTCCTCCACCTCCTCCATCCTCTCCGGTGCATCAAAACTTCGCCAAAGATCACTATCTCGA GCTGTGGTACTCGGATGTTGGAGAGTCCTTCCGCAACATTAAGGTCAAGTGCGAGAGCTCAAACTCCCAAGTGTCCTCGTTCTCGAAATTGGGGTCTGGA TCGGTCGATGACACACTCGCTACTATGACGGCTACTCTCACCACCGCCACCACCAATCTAGTGGACTCGACCAACATGATGGCCGGGCCAAAGCCGGGTC TAGATGGGATGGTGAGTAGCTCGGACTCGATCAACTCGAACGAGTTCACGAATTACTCTGACACAGCATTGAAGCAGCTGTTGGCTATGCCTGGTGGGAA TAGTGTCATGGAGTTCTTGGATGATGATGTTGTTTTCACCAACTTTCCTGATTTTAGATGTGACTGA
AA sequence Show only first row Show all	>Lus10027459 pacid=23144440 polypeptide=Lus10027459 locus=Lus10027459.g ID=Lus10027459.BGIv1.0 annot-version=v1.0 MGRSPCCDKNGVKRGAWSAEEDEILSDYINKNGHGSWRTLPQNAGLLRCGKSCRLRWTNYLRPDIKRGPFSPEEESTIVGLQATLGNKWASIASQLPGRT DNEIKNYWNTHLRKRFPAPLPKQAALNKVEAWQASMDESSSMLLTNTPPPPPSSPVHQNFAKDHYLELWYSDVGESFRNIKVKCESSNSQVSSFSKLGSG SVDDTLATMTATLTTATTNLVDSTNMMAGPKPGLDGMVSSSDSINSNEFTNYSDTALKQLLAMPGGNSVMEFLDDDVVFTNFPDFRCD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10027459 [exp]	0	1
					Lus10002011 [exp]	2.0	0.9407
AT1G67260	TCP	TCP1	TCP family transcription facto...		Lus10034072 [exp]	2.4	0.9421
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10018359 [exp]	3.5	0.9400
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Lus10015376 [exp]	3.9	0.9351
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10015382 [exp]	4.5	0.9358
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10035176 [exp]	6.5	0.9291
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10009562 [exp]	6.7	0.9201
					Lus10026122 [exp]	7.2	0.9003
AT5G18880			RNA-directed DNA polymerase (r...		Lus10023044 [exp]	7.5	0.9209
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013335 [exp]	8.4	0.9210

Compare expression of checked genes

Lus10027459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.