Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23240 144 / 4e-43 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT2G31230 121 / 9e-34 AP2_ERF ATERF15 ethylene-responsive element binding factor 15 (.1) AT1G06160 105 / 1e-27 AP2_ERF ORA59 octadecanoid-responsive Arabidopsis AP2/ERF 59 (.1) AT5G43410 100 / 7e-27 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G47220 101 / 4e-26 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT4G17500 100 / 1e-25 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT3G23230 96 / 2e-25 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1) AT5G51190 98 / 6e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G18450 98 / 2e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G47230 97 / 3e-24 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003562 [exp] 230 / 2e-76 AT3G23240 146 / 1e-43 ethylene response factor 1 (.1) Lus10033885 [exp] 224 / 1e-73 AT3G23240 142 / 7e-42 ethylene response factor 1 (.1) Lus10014655 [exp] 149 / 7e-45 AT3G23240 202 / 3e-65 ethylene response factor 1 (.1) Lus10006579 [exp] 142 / 4e-42 AT3G23240 211 / 4e-69 ethylene response factor 1 (.1) Lus10021193 [exp] 120 / 1e-33 AT3G23240 209 / 2e-68 ethylene response factor 1 (.1) Lus10022015 [exp] 117 / 1e-32 AT3G23240 176 / 1e-55 ethylene response factor 1 (.1) Lus10011829 [exp] 117 / 3e-32 AT3G23240 209 / 4e-68 ethylene response factor 1 (.1) Lus10042557 [exp] 115 / 3e-32 AT3G23240 155 / 7e-48 ethylene response factor 1 (.1) Lus10013959 [exp] 103 / 3e-28 AT3G23240 124 / 2e-36 ethylene response factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G223300 [exp] 151 / 1e-45 AT3G23240 163 / 5e-50 ethylene response factor 1 (.1) Potri.002G039000 [exp] 135 / 3e-39 AT3G23240 138 / 2e-40 ethylene response factor 1 (.1) Potri.013G045200 [exp] 130 / 1e-37 AT3G23240 167 / 5e-52 ethylene response factor 1 (.1) Potri.005G223200 [exp] 127 / 3e-36 AT3G23240 165 / 4e-51 ethylene response factor 1 (.1) Potri.002G039100 [exp] 123 / 7e-35 AT3G23240 147 / 3e-44 ethylene response factor 1 (.1) Potri.019G014409 [exp] 122 / 2e-34 AT3G23240 161 / 1e-49 ethylene response factor 1 (.1) Potri.008G166200 [exp] 117 / 8e-33 AT3G23240 202 / 1e-65 ethylene response factor 1 (.1) Potri.004G051700 [exp] 111 / 1e-30 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) Potri.004G051800 [exp] 113 / 2e-30 AT4G18450 127 / 7e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.010G072300 [exp] 112 / 2e-30 AT3G23240 201 / 2e-65 ethylene response factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10027469 pacid=23144446 polypeptide=Lus10027469 locus=Lus10027469.g ID=Lus10027469.BGIv1.0 annot-version=v1.0 ATGTCGGATCCATACTACTACTCACCCTCACCACTATACCTCTCTTCACCCCCGCAATGGAGCCCAGTCGAATTCGGAGAACAAACCCCCCTCTTCTCCC CTCCATCAAACTACTACACAATCTCACCATCGCCGGCTTACCCTCCGGTACTAGAAGAAGCAACTTCCTCCTCGGGCAAGAAGAAGTCAAAGCAGAACAA CGCTGTTTATAAGTCGGGGTACAGAGGGGTGAGGACTCGGCCGTGGGGGAAGTACGCGGCGGAGATTCGGGACTCGACGAGGAACGGGGCGAGGGTGTGG CTGGGGACGTTCGACACATCTGAGGAGGCAGCCCTAGCCTACGACCAGGCGGCGATGTCTCTGCAAGGTACGAGGGCGGTGCTCAACTTCCCTGCAGATG AAGTTAGCCGATCTCTGGATGAGATCGGCTGCCCGTTGGGGGAATGTTCCTCTCCGGCTAAGGCTCTTAAGCAGACCCATCTTATTAAGCGTAAGGCCCT CAACCAAAAAAAGAAAGGTGGTAAGCGAGGCGTGGATCCCCAAACTCAACCGCCTTATCAAGATGTGATTGAGTTTGAGGATCTAGGTCCTACGTTTTTA GAGCGGCTTCTAATTGAAACCTCAACTACTAATTATTGA
AA sequence Show only first row Show all	>Lus10027469 pacid=23144446 polypeptide=Lus10027469 locus=Lus10027469.g ID=Lus10027469.BGIv1.0 annot-version=v1.0 MSDPYYYSPSPLYLSSPPQWSPVEFGEQTPLFSPPSNYYTISPSPAYPPVLEEATSSSGKKKSKQNNAVYKSGYRGVRTRPWGKYAAEIRDSTRNGARVW LGTFDTSEEAALAYDQAAMSLQGTRAVLNFPADEVSRSLDEIGCPLGECSSPAKALKQTHLIKRKALNQKKKGGKRGVDPQTQPPYQDVIEFEDLGPTFL ERLLIETSTTNY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10027469 [exp]	0	1
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10003018 [exp]	12.2	0.8606
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10026568 [exp]	13.0	0.8413
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10032553 [exp]	19.1	0.8453
AT4G00080		UNE11	unfertilized embryo sac 11, Pl...		Lus10030292 [exp]	24.2	0.8709
AT4G32690		ATGLB3, GLB3	ARABIDOPSIS HEMOGLOBIN 3, hemo...		Lus10022120 [exp]	28.4	0.8704
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003444 [exp]	30.9	0.8640
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10016179 [exp]	33.5	0.7914
AT2G43870			Pectin lyase-like superfamily ...		Lus10002124 [exp]	35.8	0.8676
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028582 [exp]	38.5	0.8492
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10026830 [exp]	38.5	0.8446

Compare expression of checked genes

Lus10027469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.