Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52510 387 / 3e-127 GRAS SCL8 SCARECROW-like 8 (.1) AT1G21450 217 / 5e-63 GRAS SCL1 SCARECROW-like 1 (.1) AT5G48150 176 / 1e-48 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 175 / 1e-47 GRAS SCL5 scarecrow-like 5 (.1) AT2G04890 170 / 4e-47 GRAS SCL21 SCARECROW-like 21 (.1) AT4G17230 160 / 1e-42 GRAS SCL13 SCARECROW-like 13 (.1) AT1G66350 130 / 2e-32 GRAS RGL1 RGA-like 1 (.1) AT5G17490 130 / 3e-32 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G03450 127 / 5e-31 GRAS RGL2 RGA-like 2 (.1) AT1G14920 121 / 3e-29 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039265 [exp] 726 / 0 AT5G52510 503 / 1e-170 SCARECROW-like 8 (.1) Lus10029747 [exp] 207 / 1e-59 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10042776 [exp] 206 / 6e-59 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10035840 [exp] 186 / 1e-51 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10016596 [exp] 183 / 6e-51 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10036623 [exp] 177 / 8e-49 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10017554 [exp] 172 / 1e-46 AT4G17230 612 / 0.0 SCARECROW-like 13 (.1) Lus10000539 [exp] 170 / 3e-46 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1) Lus10003772 [exp] 162 / 7e-46 AT5G48150 439 / 2e-154 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G078800 [exp] 463 / 1e-156 AT5G52510 482 / 1e-162 SCARECROW-like 8 (.1) Potri.017G142400 [exp] 444 / 3e-149 AT5G52510 438 / 7e-146 SCARECROW-like 8 (.1) Potri.002G073400 [exp] 208 / 1e-59 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.005G186500 [exp] 205 / 2e-58 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.001G409500 [exp] 184 / 4e-51 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G361700 [exp] 182 / 9e-51 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.014G164400 [exp] 182 / 2e-50 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.011G131100 [exp] 177 / 1e-48 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.016G009700 [exp] 163 / 1e-43 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.006G016200 [exp] 151 / 2e-39 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10027505 pacid=23144557 polypeptide=Lus10027505 locus=Lus10027505.g ID=Lus10027505.BGIv1.0 annot-version=v1.0 ATGAATTCGTTACTCCGCTCAGTGAAGCCGAGGATTTACCAGAATAACTGCAGTGGTTTCTCCGGTAATTTCGCTAATAATAATAATCATCATAATTTCT CAGCGGAGAATTCGTTTTCCGCTCTTTCTTCTCAGAGGTACGGATTGCCGCTCCTTCAGCAGCTCAGGCCTCAGCCTATCAATGTTCTTCCTCAACAAAC GCTGCAGGGAGTTCCGTTTGCGCAAACCCGGACTCAGCACAACAAGGGAGTTGCCGTCGGGTCCGGCGGGTCGGGTGGACCCGGTCAGGAATCGGAGAAG AAAATGATGAACCGGCTTCAGGAGCTGGAGAAGCAGCTTCTGGATGACGACGACGAGGAGGTAGAAGGGGAAGAAGGACAATCCGACGCAGTTTCGGTCA TCACCAACAACACGAACAGCGAGTGGTCGGAGACGATTCAAAATCTAATTACTCCATCGTCCAGCCCCATCGAAAACAACAACAATAACGTCGGCCAGAA TCAGATTTCTCCGTCTCCTAGTCCTTCGTCGTCGTCGTCCACCACCTCCTCTTCGACGACTACTGCTGCGACGGCGAAGCCTCCTCCTTCTTCCCTTGCG ATCTGTTCGAGGCAGGTGCTGTTGGAAGCCGCCTCCGCTATATACGACGGAAAAATGGAATCTGCGGCGGAGATCTTGTCGCGATTGACCAAGTCTAACG GGGAGGGAAATTCAGAACAGAGGTTGATGGATTACTTGTTTTCGGGGCTGAAATCGAGGGTGAATCCGGCAGAGAATCCGCCGCCTGTTGCTGATTTGTA CGGGAAGGAGCACGCCGAGTCGACTCAGCTGCTTTTCGAGCTGTCTCCTTGCTTCAAGCTAGGGTTCATGGCTGCTAATCTCGCGATTCTTGAAGCTGCT CTCGAAGAAGGGAATAATAATAACAAGAAGAGCGTTTTTCATGTGGTGGATTTTGATTTGGGGAAAGGCGGACAGTACAAGAATCTTCTCTACGCTTTAT CGGAGCGGCTCAACGGGAAAAATCCTACCACGGCGGGGGCGGTGTTGGTTAAGATCACGGCGGTGGCGTTGGATTCTGTTGAGGAGGAGAAAGAGAGACT GAATGCGGTGGGGGAAACGCTCCGTCAAGTCGCGGAGCGAGTGGGATTAACGCTCCAATTCAAAGTCGTCAACTGCAATCTCACCGATCTGACCCGGGAA TCGCTCGGCGTGTCGACCGAAAATCCTCGGGACAAGCTTCTGAGGCGGGTCAAAGCAATGGAGCCGAGGATTGTGACTATAGTCGAGCAAGAGATGAACG CTAACACCGCCCCGTTCATGACTCGGGTGAACGAGGCGTGCAAGTACTACTCGGCCCTATTTGAGTCGATCGATTCGACCGTGCCAGGAGAGCCCGAGAG GGGAAAAGTCGAGGAAGGGCTCGGACGGAAGCTAGCGAACACGATCGCCTGCGAGGGAAGGGACCGAGTGGAACGGTGCGAGGTGTGGGGGAAATGGCGG GCAAGGATGGGGATGGCGGGGTTCAACATGCAGCCGCTGAGCGGGAAGGTGACCGAGTTGATGAAGGTGAGGCTCGAATCGGGGAACCGGCCCAACCCTG GGTTCACGGTTAAAGAAGAGAATGGCGGGGCTTGTTTCGGTTGGATGGGGAAATCACTCACGGTCGCTTCCGCTTGGCGTTAA
AA sequence Show only first row Show all	>Lus10027505 pacid=23144557 polypeptide=Lus10027505 locus=Lus10027505.g ID=Lus10027505.BGIv1.0 annot-version=v1.0 MNSLLRSVKPRIYQNNCSGFSGNFANNNNHHNFSAENSFSALSSQRYGLPLLQQLRPQPINVLPQQTLQGVPFAQTRTQHNKGVAVGSGGSGGPGQESEK KMMNRLQELEKQLLDDDDEEVEGEEGQSDAVSVITNNTNSEWSETIQNLITPSSSPIENNNNNVGQNQISPSPSPSSSSSTTSSSTTTAATAKPPPSSLA ICSRQVLLEAASAIYDGKMESAAEILSRLTKSNGEGNSEQRLMDYLFSGLKSRVNPAENPPPVADLYGKEHAESTQLLFELSPCFKLGFMAANLAILEAA LEEGNNNNKKSVFHVVDFDLGKGGQYKNLLYALSERLNGKNPTTAGAVLVKITAVALDSVEEEKERLNAVGETLRQVAERVGLTLQFKVVNCNLTDLTRE SLGVSTENPRDKLLRRVKAMEPRIVTIVEQEMNANTAPFMTRVNEACKYYSALFESIDSTVPGEPERGKVEEGLGRKLANTIACEGRDRVERCEVWGKWR ARMGMAGFNMQPLSGKVTELMKVRLESGNRPNPGFTVKEENGGACFGWMGKSLTVASAWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Lus10027505 [exp]	0	1
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025397 [exp]	2.2	0.8709
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017651 [exp]	3.2	0.8702
AT2G37110			PLAC8 family protein (.1)		Lus10015072 [exp]	3.9	0.8448
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039621 [exp]	7.2	0.8524
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10023018 [exp]	7.9	0.8242
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10015275 [exp]	8.3	0.8561
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10034253 [exp]	9.9	0.8193
AT5G43490			unknown protein		Lus10003153 [exp]	10.2	0.8132
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10019942 [exp]	15.0	0.8128
AT3G51650			unknown protein		Lus10025247 [exp]	16.4	0.8066

Compare expression of checked genes

Lus10027505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.