Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52660 303 / 1e-102 MYB Homeodomain-like superfamily protein (.1.2) AT4G01280 246 / 2e-80 MYB Homeodomain-like superfamily protein (.1.2) AT1G01520 244 / 6e-80 MYB ASG4 ALTERED SEED GERMINATION 4, Homeodomain-like superfamily protein (.1) AT3G09600 222 / 3e-71 MYB LCL5 (LHY-CCA1-LIKE5), REVEILLE 8 (RVE8) REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) AT5G02840 211 / 5e-67 MYB LCL1 LHY/CCA1-like 1 (.1.2.3) AT5G17300 102 / 1e-24 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1) AT5G37260 99 / 5e-24 MYB RVE2, CIR1 REVEILLE 2, CIRCADIAN 1, Homeodomain-like superfamily protein (.1) AT1G01060 99 / 7e-23 MYB LHY, LHY1 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) AT2G46830 98 / 1e-22 MYB AtCCA1, CCA1 circadian clock associated 1 (.1.2) AT1G18330 96 / 2e-22 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039284 [exp] 471 / 9e-168 AT5G52660 350 / 9e-120 Homeodomain-like superfamily protein (.1.2) Lus10038846 [exp] 321 / 3e-108 AT5G52660 292 / 2e-96 Homeodomain-like superfamily protein (.1.2) Lus10036392 [exp] 251 / 3e-82 AT5G52660 306 / 5e-103 Homeodomain-like superfamily protein (.1.2) Lus10007914 [exp] 245 / 2e-79 AT5G52660 301 / 8e-101 Homeodomain-like superfamily protein (.1.2) Lus10019902 [exp] 213 / 9e-67 AT3G09600 351 / 9e-121 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Lus10014015 [exp] 194 / 1e-58 AT3G09600 317 / 3e-106 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Lus10014966 [exp] 138 / 6e-39 AT4G25740 216 / 5e-71 RNA binding Plectin/S10 domain-containing protein (.1.2) Lus10031322 [exp] 101 / 5e-24 AT1G18330 199 / 4e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10031893 [exp] 100 / 1e-23 AT3G10113 207 / 2e-63 Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G146800 [exp] 343 / 8e-119 AT5G52660 303 / 3e-102 Homeodomain-like superfamily protein (.1.2) Potri.004G073300 [exp] 338 / 1e-116 AT5G52660 298 / 2e-100 Homeodomain-like superfamily protein (.1.2) Potri.014G089300 [exp] 291 / 1e-97 AT4G01280 293 / 2e-98 Homeodomain-like superfamily protein (.1.2) Potri.002G163100 [exp] 286 / 2e-95 AT4G01280 266 / 1e-87 Homeodomain-like superfamily protein (.1.2) Potri.006G133000 [exp] 236 / 2e-76 AT3G09600 379 / 1e-132 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.016G083900 [exp] 218 / 3e-69 AT3G09600 375 / 4e-131 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.004G074300 [exp] 100 / 2e-23 AT5G17300 218 / 5e-66 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.012G038300 [exp] 99 / 4e-23 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.017G144800 [exp] 99 / 5e-23 AT5G17300 200 / 2e-59 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.014G106800 [exp] 99 / 5e-23 AT1G01060 378 / 3e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10027521 pacid=23144485 polypeptide=Lus10027521 locus=Lus10027521.g ID=Lus10027521.BGIv1.0 annot-version=v1.0 ATGGTGTCGAAGAACCCGAACCCGGCCGAAGGATTCTACTTGGACCCCGACGAAATAGCGCTTCCTGGACTCGGACCTTTCGCCGCTTCGTCGCCGGCGG CTTCCAACGCTACGAGCTCCTCCTTCGAAGATCCGAGCAAGAAGGTACGGAAGCCATACACCATCACCAAGTCGAGGGAGAGCTGGACGGAGCCTGAGCA CGATAAGTTCCTCGAAGCTCTCCAGCTTTTCGACCGTGATTGGAAGAAGATTGAAGCATTTATTGGATCCAAAACTGTTATTCAGATACGCAGTCATGCC CAGAAGTACTTCCTAAAGGTTCAGAAAAGCGGAACAGGTGAACATCTGCCTCCTCCTCGGCCTAAAAGGAAAGCTGCTCATCCCTATCCTCAAAAGGCCT CAAAAAATGTGCTTCCACAATCTTCAGGATCCATTCAATCATCAGTTGCTCCTCTTGAACCCAGTGCACCACCTGATTCTCCTTCAATGCCATTGAACCC TATTACAAATGTCTCTGCAGTACCTAGCAAAAACAACGTGCCTGCAGTGGGTTTATCGAATCAGGGAAAAGGTCCATCATTGTCAAATAATTGTTGTAGT AGCAGTGAGAGTCCTCCCAGAACAAAACAAATTGGTGAAGTACCCGAGCATGCAAAGCCGTTAAGAGTTCTGCCGGACTTTGCCCAAGTATACACCTTCA TTGGAAGTGTTTTCGATCCGAATGTGACTGGCCATTTGCAGAAGCTTAAGAAAATGGATCCTATTGATGTCGAGACGGTGTTGTTGCTAATGCGAAACCT CTCCATTAATTTAACCAGTCCCGACTTCGAGGATCATAGAAGGCTGCTTGCGTCATATGAGATCGAAGCAGATGCAAGCAGACAATGA
AA sequence Show only first row Show all	>Lus10027521 pacid=23144485 polypeptide=Lus10027521 locus=Lus10027521.g ID=Lus10027521.BGIv1.0 annot-version=v1.0 MVSKNPNPAEGFYLDPDEIALPGLGPFAASSPAASNATSSSFEDPSKKVRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA QKYFLKVQKSGTGEHLPPPRPKRKAAHPYPQKASKNVLPQSSGSIQSSVAPLEPSAPPDSPSMPLNPITNVSAVPSKNNVPAVGLSNQGKGPSLSNNCCS SSESPPRTKQIGEVPEHAKPLRVLPDFAQVYTFIGSVFDPNVTGHLQKLKKMDPIDVETVLLLMRNLSINLTSPDFEDHRRLLASYEIEADASRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10027521 [exp]	0	1
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10039284 [exp]	1.0	0.8436
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10030757 [exp]	4.9	0.7998
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Lus10037771 [exp]	6.6	0.7740
AT2G47390			Prolyl oligopeptidase family p...		Lus10010007 [exp]	7.5	0.7663
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10013237 [exp]	11.2	0.7814
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10036149 [exp]	12.4	0.7894
AT2G20050			protein serine/threonine phosp...		Lus10034955 [exp]	15.9	0.7983
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Lus10016911 [exp]	19.3	0.7382
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Lus10035436 [exp]	19.8	0.8365
AT1G70820			phosphoglucomutase, putative /...		Lus10020414 [exp]	20.5	0.7694

Compare expression of checked genes

Lus10027521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.