Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52882 1056 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G28000 1039 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 1035 / 0 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G02890 497 / 2e-159 AAA-type ATPase family protein (.1.2) AT4G02480 477 / 1e-151 AAA-type ATPase family protein (.1) AT4G24860 424 / 9e-133 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G19740 378 / 7e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G62130 370 / 3e-113 AAA-type ATPase family protein (.1) AT1G50140 367 / 1e-112 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G27680 260 / 9e-79 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039309 [exp] 1429 / 0 AT5G52882 1140 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024692 [exp] 1014 / 0 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10017535 [exp] 1009 / 0 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10028752 [exp] 1008 / 0 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10010282 [exp] 457 / 3e-144 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10036347 [exp] 446 / 5e-140 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10013429 [exp] 355 / 6e-107 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10010204 [exp] 349 / 5e-106 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017405 [exp] 341 / 8e-103 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G035400 [exp] 1127 / 0 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G026900 [exp] 1105 / 0 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G097600 [exp] 1041 / 0 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G133700 [exp] 1023 / 0 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.012G096300 [exp] 483 / 8e-154 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.014G131000 [exp] 476 / 2e-151 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G205900 [exp] 474 / 8e-151 AT1G02890 1445 / 0.0 AAA-type ATPase family protein (.1.2) Potri.015G094100 [exp] 471 / 3e-149 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1) Potri.007G069800 [exp] 358 / 3e-109 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G093300 [exp] 340 / 1e-102 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10027551 pacid=23144460 polypeptide=Lus10027551 locus=Lus10027551.g ID=Lus10027551.BGIv1.0 annot-version=v1.0 ATGGAGAACAAAAGAGCGCTTCTTTCTGCCTTGAGCGTGGGGGTTGGAGTTGGGGTTGGGTTGGGATGGGCATCTTCTGGGCAAAGCATTAGCAGATGGG CAGTTGGGAATGGCTGCCCAGATGGTGTCTCAGCTGAACAGTTTGAGCATGAGTTGATGAGACAGGTCATTGATGGCCGAGACACCAAAATCACCTTTGA TGATTTCCCTTATTTCCTCTGCGAGAAGACTAGAATTTTGTTGATAAGTTCAGCCTATGTTCATCTAAAGGATTATGACTTCTCAAAGCACACCCGCAAT CTTTCACCTGCCAGCAGGACTATCTTGCTCTCCGGACCTTTTGAACTGTATCAGCAAATGCTTGCCAGAGCTTTAGCACATCACTTTGACTCTAAGATTC TGTTGTTGGATGCTACTGATTTTTCCGTCAAGTTGCAAAGCAAATATGGTTGCACTAAAAAGGAACCGTCTCTAAAGAAGTCTCTATCAGAGTTGGCATT GGAAGGAATGTCTGGTTTGCTTGGCTCTTTTGCCATGCTTCCTCCTAGAGAATTTAAGAAAGGCACTTTACATCGACAAGCAAGTACCTCGGATATGAAA TCAAGGAACATGGATGGTAGTGTGCCCCCCAAGCTTCGTCGAAATGCATCAATTTCATCTGATATAAGTAGCACGTCTTCCCAGTCTGCAACTAATCAAG CATCTGTCAGGCGCACAAATAACTGGTGCTTCGATGAGAAACTCTTTGTGCAATCACTTTACAAGGTGTTGGTTACAGTATCAGAAAGAAGTCCAATAAT ACTATACATCAGGGATGTGGAGAAGCTCCTTCTACAATCACAAAGGATGTTCGTCCTGTTCGATAAAATGCTAAAGAAAATTTCGGGTTCGGTGCTGATC CTAGGCTCAAGAACATTGGACCAAGAAGTCGATGGCGCAGATCTCGATGAAAGGCTCACAACGCTGTTCCAATATTGCATCGACATAAAACCACCAGAAG ATGAGGCGAATCTTGTTAACTGGAAAGCACAACTGGAAGAAGATATGAAGTTGCTTCAGATTCAAGACAACAGAAATCACATCGCCGAGGTACTTGCAGC AAACGACATCGAATGTGACGATCTGAACGCAATTTGCCATTCGGACACAATGGTTTTGAGCAATTACATACAGGAGATAGTGGTATCGGCTATCTCGTAC CATCTGATGAACGATAAAGATCCAGAATACCGCAATGGGAGACTTGTTATCTCGGCAAAGAGCTTGTCCCATGGCATGAACATATTCCAGGAAGGTAAAA TTGGTGGGAAAGACATTTTAAAGATGGAGACAAATGGCGAAGCTAGCAAGGGAGGAGAAGAGGCAGCTGCTGCAAAGACCGGATCGAAAACAGAAACCAA GAACGAAACTGAGAAATCTGCTGGTGGAGCTACTGTGAAGAAAGATGCAGATAACCCACCTCCACAAAAGGAAGTTACTCCTGACAATGAGTTTGAGAAA AGGATTAGGCCTGAGGTAATCCCTGCAAATGAGATAGGGGTGACATTTTCAGACATCGGTGCCTTAGACGAAACAAAAGAATCACTTCAAGAGCTTGTCA TGCTGCCTCTCCGAAGGCCGGACCTCTTCAACGGAGGACTTCTTAAGCCCTGCAGAGGCATACTGCTATTTGGACCTCCGGGGACGGGGAAAACAATGCT GGCCAAGGCCATAGCAAACGAAGCCGGAGCAAGCTTCATTAATGTCTCGATGTCCACTATCACTTCGAAATGGTTTGGCGAAGATGAAAAGAACGTGAGG GCGCTATTCACTCTGGCTGCAAAAGTTTCCCCTACCATCATATTTGTGGATGAGGTTGACAGCATGCTTGGTCAGAGAACTAGAGTTGGGGAGCACGAGG CGATGCGGAAGATTAAGAACGAGTTCATGACACATTGGGATGGCCTTCTGACCAAGACCGGTGAGCGCATTCTTGTTCTTGCTGCAACGAATCGCCCCTT TGACCTTGACGAAGCAATCATCAGGAGGTTCGAGCGCAGGATCATGGTTGGTCTACCAAGTGCTGAGAACAGAGAAATGATATTGAAAACTCTTCTATCC AAAGAGAAAACTGAAGATCTGGACTTCAAGGAGCTTGGAATCATGACAGAAGGTTTCAGCGGAAGTGATCTCAAGAACTTGTGTGTGACGGCTGCTTATC GACCTGTTAGAGAACTAATACAGAAAGAGAGATTGAAGGAAAAGGAGAGGAAGAAGAAAGCAGCAGAGGAAGCAACAAGCTCCGAAAATAATGCTTCTGA ATCCGACTCGAAGGAAGAAGTTAAAGAGGAGCGTGTAATCACACTTAGACCTTTGAACATGGAAGACTTGAAGCAGGCAAAGAACCAGGTTGCTGCGAGT TTCGCATCAGAAGGATCTGTAATGGGTGAGCTGAAGCAATGGAATGAATTATACGGAGAAGGAGGTTCAAGGAAGAAGCAACAGCTTTCGTATTTCCTCT GA
AA sequence Show only first row Show all	>Lus10027551 pacid=23144460 polypeptide=Lus10027551 locus=Lus10027551.g ID=Lus10027551.BGIv1.0 annot-version=v1.0 MENKRALLSALSVGVGVGVGLGWASSGQSISRWAVGNGCPDGVSAEQFEHELMRQVIDGRDTKITFDDFPYFLCEKTRILLISSAYVHLKDYDFSKHTRN LSPASRTILLSGPFELYQQMLARALAHHFDSKILLLDATDFSVKLQSKYGCTKKEPSLKKSLSELALEGMSGLLGSFAMLPPREFKKGTLHRQASTSDMK SRNMDGSVPPKLRRNASISSDISSTSSQSATNQASVRRTNNWCFDEKLFVQSLYKVLVTVSERSPIILYIRDVEKLLLQSQRMFVLFDKMLKKISGSVLI LGSRTLDQEVDGADLDERLTTLFQYCIDIKPPEDEANLVNWKAQLEEDMKLLQIQDNRNHIAEVLAANDIECDDLNAICHSDTMVLSNYIQEIVVSAISY HLMNDKDPEYRNGRLVISAKSLSHGMNIFQEGKIGGKDILKMETNGEASKGGEEAAAAKTGSKTETKNETEKSAGGATVKKDADNPPPQKEVTPDNEFEK RIRPEVIPANEIGVTFSDIGALDETKESLQELVMLPLRRPDLFNGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVR ALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKTGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLS KEKTEDLDFKELGIMTEGFSGSDLKNLCVTAAYRPVRELIQKERLKEKERKKKAAEEATSSENNASESDSKEEVKEERVITLRPLNMEDLKQAKNQVAAS FASEGSVMGELKQWNELYGEGGSRKKQQLSYFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52882			P-loop containing nucleoside t...		Lus10027551 [exp]	0	1
AT5G52882			P-loop containing nucleoside t...		Lus10027550 [exp]	1.0	0.8966
AT5G52882			P-loop containing nucleoside t...		Lus10039309 [exp]	1.4	0.8677
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10032193 [exp]	8.8	0.7779
AT5G17910			unknown protein		Lus10009544 [exp]	11.2	0.8025
AT1G05170			Galactosyltransferase family p...		Lus10031567 [exp]	13.0	0.7704
AT4G22990			Major Facilitator Superfamily ...		Lus10006340 [exp]	14.4	0.7601
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10010638 [exp]	17.0	0.7667
					Lus10020368 [exp]	18.4	0.7808
AT3G13980			unknown protein		Lus10037659 [exp]	23.1	0.7501
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Lus10018314 [exp]	24.7	0.7465

Compare expression of checked genes

Lus10027551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.