Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27950 194 / 6e-59 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT4G23750 158 / 7e-45 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT5G53290 149 / 2e-41 AP2_ERF CRF3 cytokinin response factor 3 (.1) AT3G61630 142 / 3e-39 AP2_ERF CRF6 cytokinin response factor 6 (.1) AT4G11140 124 / 2e-32 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT2G46310 124 / 2e-32 AP2_ERF CRF5 cytokinin response factor 5 (.1) AT1G71130 107 / 6e-28 AP2_ERF CRF8 cytokinin response factor 8, Integrase-type DNA-binding superfamily protein (.1) AT1G22985 103 / 3e-26 AP2_ERF CRF7 cytokinin response factor 7, Integrase-type DNA-binding superfamily protein (.1) AT2G47520 95 / 4e-23 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1) AT1G03800 96 / 9e-23 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039324 [exp] 661 / 0 AT4G27950 210 / 8e-65 cytokinin response factor 4 (.1) Lus10017550 [exp] 153 / 1e-43 AT4G23750 172 / 2e-51 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10032353 [exp] 154 / 3e-43 AT4G23750 207 / 2e-64 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10033938 [exp] 149 / 2e-41 AT4G23750 201 / 6e-62 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10003037 [exp] 113 / 3e-29 AT2G46310 122 / 8e-34 cytokinin response factor 5 (.1) Lus10018756 [exp] 114 / 2e-27 AT1G64280 506 / 2e-170 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Lus10014054 [exp] 97 / 6e-23 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10026053 [exp] 95 / 3e-22 AT5G18560 97 / 7e-24 Integrase-type DNA-binding superfamily protein (.1) Lus10014345 [exp] 94 / 5e-22 AT1G12980 97 / 1e-24 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G023200 [exp] 224 / 5e-70 AT4G27950 211 / 9e-66 cytokinin response factor 4 (.1) Potri.012G032900 [exp] 218 / 2e-67 AT4G27950 214 / 6e-67 cytokinin response factor 4 (.1) Potri.002G167400 [exp] 163 / 2e-47 AT4G27950 162 / 3e-47 cytokinin response factor 4 (.1) Potri.014G094500 [exp] 157 / 7e-45 AT2G46310 163 / 3e-48 cytokinin response factor 5 (.1) Potri.003G136300 [exp] 157 / 1e-44 AT4G11140 160 / 1e-46 cytokinin response factor 1 (.1) Potri.001G094800 [exp] 154 / 3e-43 AT4G23750 177 / 2e-52 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Potri.019G131300 [exp] 149 / 9e-42 AT4G27950 139 / 2e-38 cytokinin response factor 4 (.1) Potri.013G158500 [exp] 143 / 3e-39 AT4G27950 124 / 1e-32 cytokinin response factor 4 (.1) Potri.009G101900 [exp] 97 / 9e-23 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1) Potri.003G077700 [exp] 96 / 2e-22 AT5G13910 118 / 3e-32 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10027573 pacid=23144584 polypeptide=Lus10027573 locus=Lus10027573.g ID=Lus10027573.BGIv1.0 annot-version=v1.0 ATGGACCCGAGTTTTCTCTGTCCGACCAAGTACACAGAGCATCGAAGTCTCACCAGAAAATATATCACTACTGCTAAACCCTCTTTAAAACGCAGGAAAA GCTCTGCCATGGAGTCGGGTCACCCGACCCGGGTCGTCCGGATATCTGTGACCGACCCGGACGCGACCGACTCATCCAGTGACGAGGAGTCCGAGTTCTT TGGTCGGAGGCGGGTCAAGCGGTATGTCGAAGAGATCAGCATCGGTTGCGAGGAGGTTTCCACGGCCGATGCCGCTCCTGCTCTTCCAGCGAGGAAGAGA ACAGTGGCGGTTGAAGTACGTCCGGTCCAGACCGGTGGAGGAGGGAAGAAGTTTAGAGGTGTGCGGCAGCGGCCTTGGGGGAAATGGGCTGCGGAGATTC GGGATCCAGTGAAGAGACAGAGGTTGTGGTTGGGGACTTATAATACTGCTGAGGAGGCGGCGATGGTTTACGACAACGCCGCGATTAAGCTCCGGGGACC TGACGCCCAAACGAATTTCATCAATCCGATCGGAAAGGAAGTTGAAAAGCCGGTCGAATCGACATCCGGCGGCGGGTACGACTCCTGCGACGAGTCGTCG CATAACAACAACAACCTTTCCTCTCCAACTTCCGTTCTTCAGTTCAGAACTGATGAGTACTCCGAGCCGTTGGTTGAGCCGGATGAGCCGATGGAGTTAC TTTTAGCCGAGCCGGTTGGAGAAGAGGAAGCCACAGCTGGACTCCAGTTTCTACAGGAGTGTGAAGGGGAAAGTAGTCATTGCAATAATAACGATATTAA TCACAACAACCAAGTCACCGACTTTTACGGAGACGACGACTTCTCGGGCGAGTGTTACTACTCGCCGCAGCATCTCTCCTCGTTTTTGGAGGAATCGACG TCGTTTACTGACGATCTGTTCAACTTCACCGGCTGCAGCGAAGAGGAAGCGAAGCTCCTACAGCCGTCGCCGATTGCTTTCAACGACGATAACGAATCAA TCGTCGCCAGCGGCGCCGCTCTGTTGCAAGAGAGCTTCTCGATTCGCTGTGACGATATTTTCGCAGACATTCCCAATGTTGGGAACTCGCCCGCCTTCCA AGACAATGATGACGACTATTTCCAGGACATTGGTGATTTGTTTTTCTCCGAACCTTTAGTGTCGCTTTGA
AA sequence Show only first row Show all	>Lus10027573 pacid=23144584 polypeptide=Lus10027573 locus=Lus10027573.g ID=Lus10027573.BGIv1.0 annot-version=v1.0 MDPSFLCPTKYTEHRSLTRKYITTAKPSLKRRKSSAMESGHPTRVVRISVTDPDATDSSSDEESEFFGRRRVKRYVEEISIGCEEVSTADAAPALPARKR TVAVEVRPVQTGGGGKKFRGVRQRPWGKWAAEIRDPVKRQRLWLGTYNTAEEAAMVYDNAAIKLRGPDAQTNFINPIGKEVEKPVESTSGGGYDSCDESS HNNNNLSSPTSVLQFRTDEYSEPLVEPDEPMELLLAEPVGEEEATAGLQFLQECEGESSHCNNNDINHNNQVTDFYGDDDFSGECYYSPQHLSSFLEEST SFTDDLFNFTGCSEEEAKLLQPSPIAFNDDNESIVASGAALLQESFSIRCDDIFADIPNVGNSPAFQDNDDDYFQDIGDLFFSEPLVSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10027573 [exp]	0	1
AT2G47550			Plant invertase/pectin methyle...		Lus10020680 [exp]	2.4	0.9045
					Lus10012740 [exp]	6.6	0.8189
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10007525 [exp]	8.1	0.8017
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10020679 [exp]	9.8	0.8713
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10021491 [exp]	13.2	0.7354
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10021718 [exp]	13.9	0.7713
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10020678 [exp]	25.5	0.8277
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10035859 [exp]	28.9	0.7652
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10003651 [exp]	29.7	0.7564
AT4G05400			copper ion binding (.1.2)		Lus10008331 [exp]	30.0	0.8154

Compare expression of checked genes

Lus10027573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.